Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21249 Brassica carinata HOM05D007303 ORTHO05D009231 2.6e-32 141.4 67 100.0
BraA03t12812Z Brassica rapa HOM05D007303 ORTHO05D009231 1.9e-30 135.2 67 98.5
BraA01t04340Z Brassica rapa HOM05D007303 ORTHO05D009231 3.2e-30 134.4 67 98.5
BcaC01g04187 Brassica carinata HOM05D007303 ORTHO05D009231 5.4e-30 133.7 65 95.4
BolC3t16676H Brassica oleracea HOM05D007303 ORTHO05D009231 5.4e-30 133.7 65 95.4
Thhalv10021979m.g Eutrema salsugineum HOM05D007303 ORTHO05D009231 7.1e-30 133.3 67 97.0
BcaC09g47979 Brassica carinata HOM05D007303 ORTHO05D009231 1.2e-29 132.5 67 97.0
BolC1t05499H Brassica oleracea HOM05D007303 ORTHO05D009231 1.2e-29 132.5 67 97.0
C05p59250 Brassica napus HOM05D007303 ORTHO05D009231 2.1e-29 131.7 67 95.5
BolC5t34572H Brassica oleracea HOM05D007303 ORTHO05D009231 2.1e-29 131.7 67 95.5
BcaB04g18583 Brassica carinata HOM05D007303 ORTHO05D009231 2.7e-29 131.3 67 95.5
BcaC05g29598 Brassica carinata HOM05D007303 ORTHO05D009231 2.7e-29 131.3 67 95.5
A05p40170 Brassica napus HOM05D007303 ORTHO05D009231 2.7e-29 131.3 67 95.5
CARHR082910 Cardamine hirsuta HOM05D007303 ORTHO05D009231 2.7e-29 131.3 67 95.5
AT3G08610 Arabidopsis thaliana HOM05D007303 ORTHO05D009231 1.0e-28 129.4 67 94.0
Aa31LG5G18650 Aethionema arabicum HOM05D007303 ORTHO05D009231 1.3e-28 129.0 65 92.3
AL3G19590 Arabidopsis lyrata HOM05D007303 ORTHO05D009231 1.7e-28 128.6 67 94.0
Carub.0003s0774 Capsella rubella HOM05D007303 ORTHO05D009231 2.3e-28 128.3 67 92.5
THA.LOC104816152 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 7.3e-27 123.2 61 90.2
Aa31LG5G11350 Aethionema arabicum HOM05D007303 ORTHO05D009231 1.3e-26 122.5 67 88.1
Sp3g07060 Schrenkiella parvula HOM05D007303 ORTHO05D009231 3.6e-26 120.9 55 100.0
Hund19736 Selenicereus undatus HOM05D007303 ORTHO05D009231 2.4e-25 118.2 66 80.3
TWI74G1491 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 3.1e-25 117.9 61 86.9
THA.LOC104820511 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 5.3e-25 117.1 57 91.2
Hma1.2p1_0174F.1_g076630 Hydrangea macrophylla HOM05D007303 ORTHO05D009231 1.5e-24 115.5 65 81.5
TWI53G0471 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 2.6e-24 114.8 61 83.6
Prupe.6G297800 Prunus persica HOM05D007303 ORTHO05D009231 3.4e-24 114.4 66 80.3
RcHm_v2.0_Chr3g0459881 Rosa chinensis HOM05D007303 ORTHO05D009231 3.4e-24 114.4 66 77.3
FAN05G5278 Fragaria x ananassa HOM05D007303 ORTHO05D009231 4.5e-24 114.0 66 77.3
FAN09G2915 Fragaria x ananassa HOM05D007303 ORTHO05D009231 4.5e-24 114.0 66 77.3
Haze_21228 Corylus avellana HOM05D007303 ORTHO05D009231 7.6e-24 113.2 63 79.4
Duzib151G0876 Durio zibethinus HOM05D007303 ORTHO05D009231 7.6e-24 113.2 67 74.6
FvH4_6g09420 Fragaria vesca HOM05D007303 ORTHO05D009231 9.9e-24 112.8 66 75.8
CANSAT83G0001 Cannabis sativa HOM05D007303 ORTHO05D009231 1.3e-23 112.5 59 86.4
COL.COLO4_05680 Corchorus olitorius HOM05D007303 ORTHO05D009231 1.3e-23 112.5 66 77.3
Ah.15g089810 Amaranthus hybridus HOM05D007303 ORTHO05D009231 2.2e-23 111.7 66 75.8
FAN14G3833 Fragaria x ananassa HOM05D007303 ORTHO05D009231 2.2e-23 111.7 66 77.3
MD04G1177900 Malus domestica HOM05D007303 ORTHO05D009231 2.2e-23 111.7 60 83.3
MD12G1193500 Malus domestica HOM05D007303 ORTHO05D009231 2.2e-23 111.7 60 83.3
Thecc.04G147800 Theobroma cacao HOM05D007303 ORTHO05D009231 2.2e-23 111.7 67 76.1
AUR62006451 Chenopodium quinoa HOM05D007303 ORTHO05D009231 3.8e-23 110.9 58 84.5
Cfa017000 Carpinus fangiana HOM05D007303 ORTHO05D009231 4.9e-23 110.5 63 77.8
Gohir.A10G152200 Gossypium hirsutum HOM05D007303 ORTHO05D009231 4.9e-23 110.5 63 76.2
Gohir.A10G152700 Gossypium hirsutum HOM05D007303 ORTHO05D009231 4.9e-23 110.5 63 76.2
Gohir.D10G113500 Gossypium hirsutum HOM05D007303 ORTHO05D009231 4.9e-23 110.5 63 76.2
Gohir.D10G114000 Gossypium hirsutum HOM05D007303 ORTHO05D009231 4.9e-23 110.5 63 76.2
Gorai.011G125300 Gossypium raimondii HOM05D007303 ORTHO05D009231 4.9e-23 110.5 63 76.2
Gorai.011G125800 Gossypium raimondii HOM05D007303 ORTHO05D009231 4.9e-23 110.5 63 76.2
PGR031G1377 Punica granatum HOM05D007303 ORTHO05D009231 8.4e-23 109.8 65 76.9
Migut.L02050 Erythranthe guttata HOM05D007303 ORTHO05D009231 1.4e-22 109.0 68 73.5
CiPaw.10G166700 Carya illinoinensis HOM05D007303 ORTHO05D009231 1.9e-22 108.6 63 77.8
Glyma.09G271600 Glycine max HOM05D007303 ORTHO05D009231 1.9e-22 108.6 63 76.2
CAN.G65.102 Capsicum annuum HOM05D007303 ORTHO05D009231 2.4e-22 108.2 66 78.8
Ca_23107_v3 Cicer arietinum L. HOM05D007303 ORTHO05D009231 2.4e-22 108.2 63 76.2
Glyma.18G217700 Glycine max HOM05D007303 ORTHO05D009231 2.4e-22 108.2 63 74.6
Medtr8g005360 Medicago truncatula HOM05D007303 ORTHO05D009231 2.4e-22 108.2 63 76.2
Oeu035181.1 Olea europaea HOM05D007303 ORTHO05D009231 2.4e-22 108.2 65 72.3
MELO3C025258.2 Cucumis melo HOM05D007303 ORTHO05D009231 3.2e-22 107.8 63 77.8
CsaV3_4G027390 Cucumis sativus L. HOM05D007303 ORTHO05D009231 3.2e-22 107.8 63 77.8
Manes.09G121600 Manihot esculenta HOM05D007303 ORTHO05D009231 3.2e-22 107.8 58 82.8
Nitab4.5_0001215g0100 Nicotiana tabacum HOM05D007303 ORTHO05D009231 3.2e-22 107.8 66 77.3
SalBow4G1964 Salvia bowleyana HOM05D007303 ORTHO05D009231 3.2e-22 107.8 69 72.5
SalBow4G2888 Salvia bowleyana HOM05D007303 ORTHO05D009231 3.2e-22 107.8 69 72.5
Oeu026929.1 Olea europaea HOM05D007303 ORTHO05D009231 4.2e-22 107.5 66 75.8
Cpa.g.sc0.70 Carica papaya HOM05D007303 ORTHO05D009231 7.1e-22 106.7 67 74.6
ClCG04G006170 Citrullus lanatus HOM05D007303 ORTHO05D009231 9.3e-22 106.3 63 77.8
GSVIVG01010904001 Vitis vinifera HOM05D007303 ORTHO05D009231 9.3e-22 106.3 63 73.0
TAR633G2342 Trochodendron aralioides HOM05D007303 ORTHO05D009231 1.2e-21 105.9 56 80.4
Sed0004919 Sechium edule HOM05D007303 ORTHO05D009231 1.6e-21 105.5 67 73.1
Sc20g0007240 Simmondsia chinensis HOM05D007303 ORTHO05D009231 1.6e-21 105.5 63 76.2
Sopen10g027350 Solanum pennellii HOM05D007303 ORTHO05D009231 1.6e-21 105.5 66 75.8
PGSC0003DMG400027701 Solanum tuberosum HOM05D007303 ORTHO05D009231 1.6e-21 105.5 66 75.8
Duzib212G0558 Durio zibethinus HOM05D007303 ORTHO05D009231 2.7e-21 104.8 67 71.6
Eucgr.K01299 Eucalyptus grandis HOM05D007303 ORTHO05D009231 2.7e-21 104.8 67 71.6
Phvul.008G079100 Phaseolus vulgaris HOM05D007303 ORTHO05D009231 3.5e-21 104.4 63 73.0
Psat6g005160 Pisum sativum HOM05D007303 ORTHO05D009231 3.5e-21 104.4 61 75.4
Oeu007820.2 Olea europaea HOM05D007303 ORTHO05D009231 6.0e-21 103.6 65 72.3
Lj3g0023771 Lotus japonicus HOM05D007303 ORTHO05D009231 1.8e-20 102.1 68 73.5
arahy.Tifrunner.gnm1.ann1.RL3GXR Arachis hypogaea HOM05D007303 ORTHO05D009231 6.7e-20 100.1 63 73.0
arahy.Tifrunner.gnm1.ann1.ZQ7RI8 Arachis hypogaea HOM05D007303 ORTHO05D009231 6.7e-20 100.1 63 73.0
Os05g0481600 Oryza sativa ssp. japonica HOM05D007303 ORTHO05D009231 6.7e-20 100.1 60 73.3
PSO384G4262 Papaver somniferum HOM05D007303 ORTHO05D009231 8.7e-20 99.8 59 74.6
Cc06_g00200 Coffea canephora HOM05D007303 ORTHO05D009231 2.5e-19 98.2 61 75.4
Lsat_1_v5_gn_8_109701 Lactuca sativa HOM05D007303 ORTHO05D009231 3.3e-19 97.8 63 71.4
DCAR_023961 Daucus carota HOM05D007303 ORTHO05D009231 4.3e-19 97.4 54 83.3
ECA236G3381 Erigeron canadensis HOM05D007303 ORTHO05D009231 3.6e-18 94.4 62 74.2
QL07p031324 Quercus lobata HOM05D007303 ORTHO05D009231 8.1e-18 93.2 63 68.3
Potri.016G140900 Populus trichocarpa HOM05D007303 ORTHO05D009231 2.4e-17 91.7 59 67.8
Oeu028466.1 Olea europaea HOM05D007303 ORTHO05D009231 3.4e-16 87.8 68 61.8
SEGI_21984 Sequoiadendron giganteum HOM05D007303 ORTHO05D009231 4.5e-16 87.4 66 60.6
CiPaw.01G273900 Carya illinoinensis HOM05D007303 ORTHO05D009231 4.2e-14 80.9 59 64.4
A03p36440 Brassica napus HOM05D007303 ORTHO05D009231 1.6e-13 79.0 36 100.0
Cc09_g07100 Coffea canephora HOM05D007303 ORTHO05D009231 2.1e-13 78.6 63 63.5
Manes.08G168000 Manihot esculenta HOM05D007303 ORTHO05D009231 6.0e-13 77.0 43 79.1
Cc00_g04100 Coffea canephora HOM05D007303 ORTHO05D009231 5.1e-12 73.9 63 60.3
CSS0019093 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 1.3e-10 69.3 36 88.9
Sabra04G0157400 Salix brachista HOM05D007303 ORTHO05D009231 2.8e-10 68.2 39 76.9
MBI15_g31036_MAGBIO Magnolia biondii HOM05D007303 ORTHO05D009231 4.8e-10 67.4 40 70.0
CSS0017493 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 8.2e-10 66.6 36 83.3
CSS0048723 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 8.2e-10 66.6 36 83.3
Mapoly0148s0030 Marchantia polymorpha HOM05D007303 ORTHO05D009231 8.2e-10 66.6 59 52.5
Zm00001eb290920 Zea mays HOM05D007303 ORTHO05D009231 1.1e-09 66.2 38 76.3
Pp3c10_5690 Physcomitrium patens HOM05D007303 ORTHO05D009231 1.4e-09 65.9 53 50.9
Pp3c10_5720 Physcomitrium patens HOM05D007303 ORTHO05D009231 1.4e-09 65.9 53 50.9
CBR_g5630 Chara braunii HOM05D007303 ORTHO05D009231 5.3e-09 63.9 55 52.7
Cc07_g13470 Coffea canephora HOM05D007303 ORTHO05D009231 3.2e-06 54.7 41 58.5


User provided reference genes

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