Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 0.0e+00 1143.3 598 100.0
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 0.0e+00 1095.5 599 96.2
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 0.0e+00 1092.8 598 95.7
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 0.0e+00 1081.2 599 95.0
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 3.7e-311 1070.8 598 93.6
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 3.7e-311 1070.8 598 94.0
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 5.8e-309 1063.5 597 93.1
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 3.8e-308 1060.8 597 92.6
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 6.5e-308 1060.1 598 92.5
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 4.2e-307 1057.4 598 92.5
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.6e-306 1055.4 598 92.3
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 4.6e-306 1053.9 598 92.0
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 6.0e-306 1053.5 598 92.0
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 4.5e-301 1037.3 599 91.5
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 2.2e-300 1035.0 599 91.7
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 2.5e-299 1031.6 599 91.2
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 7.1e-299 1030.0 597 91.6
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.8e-294 1015.4 599 90.3
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 3.3e-288 994.6 599 87.3
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.8e-270 935.6 594 81.8
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 7.7e-253 877.1 588 75.9
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.3e-252 875.5 593 77.7
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 1.6e-250 869.4 593 77.2
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 6.1e-250 867.5 597 77.1
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 1.0e-249 866.7 592 76.5
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.8e-249 865.9 592 74.7
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 2.3e-249 865.5 601 76.2
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 3.0e-249 865.1 598 75.4
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.4e-248 861.7 593 76.7
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 7.5e-248 860.5 597 74.7
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 7.5e-248 860.5 590 74.6
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 9.8e-248 860.1 593 76.9
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 9.8e-248 860.1 593 76.9
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 9.8e-248 860.1 593 76.9
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.3e-247 859.8 591 76.6
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 4.9e-247 857.8 593 76.7
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 4.9e-247 857.8 589 74.9
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 4.9e-247 857.8 591 73.9
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.1e-246 856.7 598 75.8
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.4e-246 856.3 592 74.0
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 1.4e-246 856.3 593 74.2
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.4e-246 856.3 596 75.7
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 1.8e-246 855.9 592 74.3
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 7.0e-246 854.0 593 72.8
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 7.0e-246 854.0 598 75.3
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 9.2e-246 853.6 595 73.9
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.2e-245 853.2 589 74.5
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.0e-245 852.4 597 74.0
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 2.0e-245 852.4 588 74.0
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 2.7e-245 852.0 592 74.0
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 3.5e-245 851.7 595 75.0
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.6e-245 851.3 595 75.3
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 8.6e-244 847.0 596 74.0
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 8.6e-244 847.0 592 73.5
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.2e-242 843.2 592 75.2
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 2.1e-242 842.4 602 74.6
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.1e-242 842.4 595 74.5
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 3.6e-242 841.6 595 74.5
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 3.6e-242 841.6 570 76.0
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 4.7e-242 841.3 592 75.2
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 6.2e-242 840.9 599 74.0
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 6.2e-242 840.9 593 74.4
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.8e-241 839.3 593 73.9
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 2.3e-241 839.0 592 73.1
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.3e-241 839.0 596 74.2
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.3e-241 839.0 593 73.7
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.1e-241 838.6 594 74.1
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 6.8e-241 837.4 592 72.5
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.5e-240 836.3 593 74.2
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 3.7e-239 831.6 602 72.6
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 3.7e-239 831.6 570 75.4
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 3.7e-239 831.6 592 73.6
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 6.4e-239 830.9 567 75.1
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 7.8e-237 823.9 591 72.1
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 1.0e-236 823.5 591 72.4
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.3e-236 823.2 594 73.1
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 3.9e-236 821.6 603 71.6
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 6.6e-236 820.8 593 72.3
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.1e-235 820.1 593 72.3
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.5e-235 819.7 566 75.3
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.9e-235 819.3 572 74.1
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 7.3e-235 817.4 593 72.2
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 9.5e-235 817.0 595 71.1
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 9.5e-235 817.0 572 74.0
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 2.3e-233 812.4 590 71.9
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 4.0e-233 811.6 629 69.5
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 5.2e-233 811.2 570 74.4
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 1.2e-232 810.1 592 72.1
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 5.8e-232 807.7 698 63.8
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 9.8e-232 807.0 593 71.5
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 9.8e-232 807.0 509 79.2
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.6e-229 799.7 590 70.5
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.3e-228 796.6 593 71.2
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.9e-227 792.7 698 62.0
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 4.3e-227 791.6 594 71.4
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 4.3e-227 791.6 614 69.1
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.2e-226 790.0 569 73.1
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 2.1e-226 789.3 592 71.5
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 6.2e-226 787.7 594 70.9
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.9e-222 776.2 592 68.8
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.1e-221 772.7 592 70.1
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 4.6e-221 771.5 593 69.8
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 6.0e-221 771.2 600 67.2
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 3.9e-220 768.5 592 69.4
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.3e-219 765.4 597 67.7
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 2.1e-218 762.7 599 67.8
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.6e-218 761.9 599 66.9
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 6.2e-218 761.1 596 66.8
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 6.2e-218 761.1 592 68.9
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.8e-217 759.6 599 66.4
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 3.1e-217 758.8 512 74.8
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 4.6e-213 745.0 561 70.6
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 7.3e-211 737.6 593 67.3
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 4.8e-210 734.9 576 67.2
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.8e-209 733.0 534 71.5
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.9e-207 725.7 573 67.2
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.1e-203 713.8 594 63.8
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 2.1e-197 693.0 601 63.2
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 8.7e-196 687.6 372 97.3
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 2.4e-193 679.5 383 91.6
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 3.8e-191 672.2 528 67.8
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 5.1e-188 661.8 591 61.1
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 7.2e-182 641.3 501 68.1
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 7.4e-179 631.3 444 73.2
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 3.6e-173 612.5 434 73.5
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.9e-172 609.0 479 67.4
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 6.5e-167 591.7 508 64.8
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 7.0e-161 571.6 526 60.6
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 3.4e-139 499.6 586 49.0
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.6e-133 480.7 571 52.9
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.5e-126 456.8 329 73.3
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.0e-124 451.4 401 62.6
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.6e-112 411.0 252 81.7
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 4.6e-112 409.5 514 47.9
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.0e-111 406.8 310 68.7
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 8.9e-108 395.2 293 73.0
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 3.5e-104 383.3 210 95.2
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 4.2e-97 359.8 556 42.4
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.1e-84 317.0 232 72.0
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.0e-76 290.0 186 78.5
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 1.2e-64 251.9 258 53.5
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 5.0e-58 229.9 350 39.7
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 1.2e-48 198.7 130 77.7
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 1.1e-46 192.2 270 43.3
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 4.8e-37 160.2 122 69.7
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.2e-30 139.0 137 56.2
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 2.8e-29 134.4 102 76.5
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 2.1e-24 118.2 70 92.9
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 2.1e-24 118.2 70 92.9
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 2.3e-23 114.8 70 90.0
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 4.9e-21 107.1 188 41.0
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.4e-20 105.5 114 56.1
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.4e-20 105.5 206 38.8
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.9e-18 97.8 50 86.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.9e-17 95.1 52 94.2
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.9e-17 95.1 52 94.2
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 1.9e-17 95.1 112 53.6
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 5.6e-17 93.6 78 70.5
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 6.1e-16 90.1 51 82.4
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 2.0e-14 85.1 52 84.6
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.7e-13 80.9 71 62.0
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 2.8e-08 64.7 57 54.4
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 8.0e-08 63.2 30 96.7
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 8.0e-08 63.2 30 96.7


User provided reference genes

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