Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 2004.9 1047 100.0
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1924.1 1081 92.5
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1917.1 1081 92.0
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1893.6 1034 94.6
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1885.9 1057 92.5
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1872.8 1058 92.2
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1870.5 1072 90.0
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1867.8 1072 89.8
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1856.3 1055 91.4
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1847.4 1056 91.2
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1843.6 1055 91.2
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1832.8 1041 91.6
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1818.9 1068 88.4
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1815.0 1056 90.0
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1813.5 1063 89.3
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1799.3 1068 87.7
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1791.5 1057 89.1
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1768.4 1068 86.4
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1745.3 1068 85.6
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1696.4 1058 82.8
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1661.0 1062 82.7
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1508.4 1068 73.5
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1506.9 1087 72.1
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1501.1 1065 73.3
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1491.5 1071 72.3
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1490.7 1077 72.2
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1490.7 1071 72.7
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1488.4 1078 71.2
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1483.0 1078 72.0
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1478.8 1071 71.9
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1471.1 1077 70.5
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1470.7 1080 70.6
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1469.9 1072 71.4
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1469.5 1070 71.6
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1468.8 1081 70.4
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1464.9 1072 71.5
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1464.1 1072 71.2
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1461.4 1084 70.8
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1460.3 1075 69.8
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1458.7 1072 71.5
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1456.4 1068 70.4
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1455.7 1078 70.2
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1452.2 1073 70.5
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1451.4 1076 70.0
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1447.6 1070 70.0
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1446.8 1078 70.6
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1443.7 1069 70.3
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1440.6 1072 70.7
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1439.9 1067 71.1
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1439.5 1072 70.4
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1439.1 1080 69.1
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1438.3 1076 69.4
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1436.0 1072 70.1
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1435.2 1072 70.1
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1434.1 1042 71.7
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1432.9 1072 70.1
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1431.4 1062 70.4
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1431.0 1025 73.1
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1429.1 1060 70.6
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1428.7 1060 70.4
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1427.9 1063 70.4
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1424.8 1081 68.5
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1423.3 1078 68.7
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1421.0 1065 69.6
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1414.4 1071 68.8
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1405.6 1071 68.6
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1398.3 1077 68.0
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1384.4 1148 65.1
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1380.5 1076 67.0
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1378.6 1055 69.5
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1374.8 1076 67.8
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1357.8 1094 65.8
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1356.7 1079 65.9
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1356.7 1112 65.6
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1351.7 1082 66.2
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1337.8 1059 66.9
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1315.4 1057 65.5
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1302.7 988 69.6
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1302.3 1098 63.4
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1302.0 1062 65.3
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1291.2 1186 61.2
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1290.4 1063 65.0
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1288.9 1134 63.0
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1279.2 1057 64.3
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1261.5 1071 64.1
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1259.6 1069 64.5
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1259.2 1003 67.1
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1254.2 1107 62.3
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1251.5 1153 61.1
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1243.4 947 68.6
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1234.2 1102 61.3
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1216.8 1095 60.1
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1213.7 1060 62.5
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1209.9 1043 62.8
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1203.7 1171 59.4
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1199.9 1068 59.0
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1189.1 1070 58.4
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1185.6 1064 59.0
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1172.5 1012 61.4
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1172.1 1060 61.1
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1169.1 1049 62.2
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1163.3 1056 61.4
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1097.4 1066 58.1
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1088.6 865 65.5
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1077.8 1251 51.5
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 7.1e-302 1040.8 901 61.0
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.0e-300 1036.9 739 72.4
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 4.6e-293 1011.5 899 61.7
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 2.3e-276 956.1 544 90.4
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 4.2e-270 935.3 1086 48.6
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.7e-269 932.6 1098 47.5
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 6.3e-266 921.4 727 68.0
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 8.2e-266 921.0 965 55.6
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.2e-250 869.8 1089 45.8
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.7e-247 860.1 825 57.6
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.9e-246 856.7 628 72.0
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 1.5e-238 830.5 1033 45.6
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 8.3e-234 814.7 1074 43.5
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 1.7e-223 780.4 417 95.2
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.2e-213 747.7 774 56.3
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 3.1e-204 716.5 568 68.1
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.9e-201 707.2 517 70.4
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.2e-200 704.5 553 67.8
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 1.6e-189 667.5 548 65.9
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 4.9e-186 656.0 702 52.8
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 3.8e-178 629.8 1224 34.8
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.5e-174 617.8 525 64.8
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 3.8e-170 603.2 808 43.9
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 9.3e-161 572.0 832 44.7
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 1.8e-151 541.2 386 72.8
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 3.8e-138 496.9 375 71.2
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.8e-124 451.4 346 68.5
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 2.3e-114 417.9 359 63.5
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 6.6e-114 416.4 315 70.5
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.5e-113 413.3 387 56.6
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 3.1e-108 397.5 332 65.1
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.5e-107 394.0 366 59.8
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 2.3e-98 364.8 275 68.7
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 2.5e-97 361.3 308 65.3
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.6e-88 332.0 355 52.4
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 1.8e-87 328.6 186 89.2
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 8.1e-80 303.1 228 67.5
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 2.0e-62 245.4 176 70.5
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 1.9e-57 228.8 143 76.9
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 6.9e-55 220.3 162 64.8
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 2.1e-51 208.8 130 78.5
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 2.5e-49 201.8 130 79.2
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 4.0e-47 194.5 139 66.9
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 5.3e-47 194.1 103 94.2
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.0e-46 192.2 108 87.0
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 1.5e-38 166.0 117 70.1
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 4.3e-33 147.9 85 82.4
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 3.1e-31 141.7 87 75.9
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 5.3e-31 141.0 111 62.2
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 3.4e-30 138.3 86 72.1
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 2.2e-29 135.6 144 52.8
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.9e-28 132.5 80 76.2
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 8.8e-26 123.6 92 68.5
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-25 123.2 79 70.9
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 9.7e-25 120.2 204 32.4
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 9.7e-25 120.2 168 45.2
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 1.7e-24 119.4 111 58.6
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 1.7e-24 119.4 79 69.6
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.1e-23 116.7 98 63.3
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.3e-18 99.0 86 62.8
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 6.7e-18 97.4 100 53.0
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 9.7e-17 93.6 81 55.6
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-15 90.1 82 54.9
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-15 90.1 82 54.9
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 8.5e-13 80.5 61 62.3
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 8.5e-13 80.5 61 62.3
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 5.5e-12 77.8 53 77.4
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.6e-11 76.3 49 71.4
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 4.0e-10 71.6 71 52.1
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 2.6e-09 68.9 58 60.3
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 5.7e-09 67.8 48 68.8
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.1e-07 63.5 47 59.6


User provided reference genes

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