Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 9.3e-256 886.3 435 100.0
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 5.3e-219 764.2 483 81.4
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 7.0e-219 763.8 482 81.3
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 2.6e-218 761.9 481 81.3
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 2.8e-212 741.9 492 76.8
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 1.4e-206 723.0 492 75.4
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 1.2e-205 719.9 487 74.7
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 3.7e-204 714.9 490 74.3
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 3.1e-203 711.8 489 73.6
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 4.0e-198 694.9 488 73.6
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 4.0e-182 641.7 491 68.6
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 5.1e-153 545.0 468 58.5
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 2.5e-152 542.7 466 58.2
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 1.3e-151 540.4 461 57.3
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 1.6e-151 540.0 482 57.5
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 2.4e-150 536.2 470 58.3
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 2.4e-150 536.2 469 59.3
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 5.3e-150 535.0 485 56.5
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 5.8e-149 531.6 474 57.0
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.6e-149 531.2 489 57.5
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 9.9e-149 530.8 473 56.4
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.2e-148 529.6 478 57.9
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.9e-148 529.3 478 57.5
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.9e-148 529.3 488 57.0
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.9e-148 529.3 478 58.4
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.8e-148 528.9 489 57.3
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.8e-148 528.9 489 57.3
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.9e-148 528.5 478 57.7
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.4e-148 527.7 489 57.1
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 1.1e-147 527.3 485 56.7
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.4e-147 526.9 489 56.6
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.4e-147 526.9 489 57.1
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.4e-147 526.9 478 57.5
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 1.4e-147 526.9 456 59.4
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.4e-147 526.2 489 57.1
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 2.1e-146 523.1 479 57.2
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.7e-145 520.0 485 56.1
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 2.3e-145 519.6 474 58.0
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 3.0e-145 519.2 458 59.0
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 3.0e-145 519.2 477 56.0
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 3.9e-145 518.8 400 62.8
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 3.9e-145 518.8 488 55.7
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 6.6e-145 518.1 478 55.6
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 1.1e-144 517.3 475 57.1
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 4.3e-144 515.4 483 55.9
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 2.1e-143 513.1 469 56.9
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 2.8e-143 512.7 497 55.9
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 2.8e-143 512.7 492 55.7
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 8.1e-143 511.1 472 57.2
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.4e-142 510.4 482 55.6
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 3.1e-142 509.2 404 61.9
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 3.4e-141 505.8 399 63.2
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 4.5e-141 505.4 466 56.2
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 7.6e-141 504.6 400 62.8
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 1.3e-140 503.8 409 61.6
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 1.3e-140 503.8 470 55.7
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 2.2e-140 503.1 399 61.9
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 6.4e-140 501.5 400 61.8
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 8.4e-140 501.1 485 56.1
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 9.3e-139 497.7 397 62.0
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 9.3e-139 497.7 400 62.0
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 1.2e-138 497.3 385 62.3
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 1.2e-138 497.3 417 60.4
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 2.1e-138 496.5 397 62.2
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 4.6e-138 495.4 408 61.3
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 6.0e-138 495.0 471 54.1
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 2.3e-137 493.0 396 62.9
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 3.9e-137 492.3 399 61.7
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 3.9e-137 492.3 474 53.4
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 3.7e-135 485.7 465 54.2
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 1.4e-134 483.8 398 60.3
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 2.0e-133 479.9 402 59.7
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 4.9e-132 475.3 490 52.2
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 8.4e-132 474.6 450 55.8
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 3.2e-131 472.6 392 58.9
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 4.2e-131 472.2 360 64.4
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 9.3e-131 471.1 482 52.3
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 5.7e-128 461.8 378 59.8
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 2.1e-127 459.9 402 58.0
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 5.3e-126 455.3 364 61.3
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 5.8e-125 451.8 368 61.1
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 2.2e-124 449.9 397 57.4
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 8.4e-124 448.0 400 55.8
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 8.4e-124 448.0 402 58.0
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 1.4e-123 447.2 359 60.7
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 4.2e-123 445.7 416 55.5
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 3.3e-120 436.0 471 49.7
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 3.7e-119 432.6 479 50.5
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 5.3e-118 428.7 351 62.1
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 4.5e-117 425.6 346 62.4
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 7.7e-117 424.9 485 47.8
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 2.7e-106 389.8 399 51.9
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 2.7e-98 363.2 385 50.1
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 6.1e-98 362.1 334 56.6
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 3.7e-87 326.2 289 59.2
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 7.7e-85 318.5 417 44.6
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 8.6e-76 288.5 401 41.1
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 2.0e-72 277.3 432 38.4
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 7.8e-69 265.4 453 37.1
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 2.3e-68 263.8 295 48.5
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 1.9e-59 234.2 443 37.0
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 6.8e-57 225.7 157 66.9
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.6e-56 223.8 208 56.2
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.6e-50 204.5 369 36.0
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 5.6e-43 179.5 272 39.7
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 9.9e-40 168.7 119 62.2
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 7.3e-27 125.9 89 69.7
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 1.5e-24 118.2 322 26.4
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 1.5e-19 101.7 59 83.1
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 1.1e-17 95.5 67 68.7
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 1.4e-17 95.1 300 28.3
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 2.8e-10 70.9 278 26.6
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 1.3e-07 62.0 80 42.5


User provided reference genes

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