Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21185 Brassica carinata HOM05D010059 ORTHO05D011752 0.0e+00 1125.9 650 100.0
BcaC05g29438 Brassica carinata HOM05D010059 ORTHO05D011752 4.3e-140 502.7 1004 38.9
BraA01t04230Z Brassica rapa HOM05D010059 ORTHO05D011752 7.2e-119 432.2 672 50.1
BolC1t05368H Brassica oleracea HOM05D010059 ORTHO05D011752 8.2e-107 392.1 672 44.0
BraA05t22641Z Brassica rapa HOM05D010059 ORTHO05D011752 4.1e-106 389.8 664 47.1
C05p57400 Brassica napus HOM05D010059 ORTHO05D011752 3.5e-105 386.7 662 47.4
BolC5t34396H Brassica oleracea HOM05D010059 ORTHO05D011752 3.5e-105 386.7 662 47.4
A05p38500 Brassica napus HOM05D010059 ORTHO05D011752 1.0e-104 385.2 664 47.0
Sp3g09000 Schrenkiella parvula HOM05D010059 ORTHO05D011752 1.0e-104 385.2 652 48.0
Thhalv10020532m.g Eutrema salsugineum HOM05D010059 ORTHO05D011752 3.8e-104 383.3 676 46.0
BcaB04g21184 Brassica carinata HOM05D010059 ORTHO05D011752 3.6e-102 376.7 387 62.5
A01p41550 Brassica napus HOM05D010059 ORTHO05D011752 8.5e-96 355.5 662 46.1
AL3G22150 Arabidopsis lyrata HOM05D010059 ORTHO05D011752 4.2e-95 353.2 659 46.3
AT3G10680 Arabidopsis thaliana HOM05D010059 ORTHO05D011752 4.2e-95 353.2 650 46.2
Carub.0003s0991 Capsella rubella HOM05D010059 ORTHO05D011752 7.0e-82 309.3 694 42.1
CARHR085260 Cardamine hirsuta HOM05D010059 ORTHO05D011752 1.9e-79 301.2 645 41.2
THA.LOC104816481 Tarenaya hassleriana HOM05D010059 ORTHO05D011752 3.2e-42 177.6 218 48.2
Sabra08G0008700 Salix brachista HOM05D010059 ORTHO05D011752 3.2e-18 97.8 215 29.8
Aa31LG3G3540 Aethionema arabicum HOM05D010059 ORTHO05D011752 1.2e-17 95.9 429 27.7
A10p31260 Brassica napus HOM05D000881 ORTHO05D000666 3.9e-16 90.9 334 25.4
BraA10t45169Z Brassica rapa HOM05D000881 ORTHO05D000666 1.5e-15 89.0 312 26.6
Potri.008G014000 Populus trichocarpa HOM05D027296 ORTHO05D037401 6.3e-14 83.6 217 27.2
Ciclev10018348m.g Citrus clementina HOM05D000881 ORTHO05D000666 1.1e-13 82.8 196 28.1
C09p71880 Brassica napus HOM05D000881 ORTHO05D000666 6.9e-13 80.1 322 24.8
FAN06G2536 Fragaria x ananassa HOM05D000881 ORTHO05D000666 6.9e-13 80.1 361 22.7
BolC2t06177H Brassica oleracea HOM05D010059 ORTHO05D000666 2.6e-12 78.2 155 31.6
BcaC03g13137 Brassica carinata HOM05D000881 ORTHO05D000666 3.4e-12 77.8 155 31.0
C02p02100 Brassica napus HOM05D000881 ORTHO05D000666 3.4e-12 77.8 155 31.0
AL6G14570 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 5.9e-12 77.0 104 33.7
FvH4_7g05240 Fragaria vesca HOM05D000881 ORTHO05D000666 5.9e-12 77.0 360 22.5
Potri.008G013800 Populus trichocarpa HOM05D000881 ORTHO05D000666 1.7e-11 75.5 217 22.6
A03p01910 Brassica napus HOM05D000881 ORTHO05D000666 2.2e-11 75.1 106 34.0
BraA02t04826Z Brassica rapa HOM05D000881 ORTHO05D000666 2.2e-11 75.1 155 31.6
BraA03t09561Z Brassica rapa HOM05D000881 ORTHO05D000666 2.2e-11 75.1 106 34.0
BcaC06g32196 Brassica carinata HOM05D000881 ORTHO05D000666 2.9e-11 74.7 106 34.0
Gohir.A03G163700 Gossypium hirsutum HOM05D010059 ORTHO05D000666 2.9e-11 74.7 85 37.6
BcaB01g05921 Brassica carinata HOM05D000881 ORTHO05D000666 3.8e-11 74.3 106 34.0
C03p02280 Brassica napus HOM05D000881 ORTHO05D000666 3.8e-11 74.3 106 34.0
Gorai.012G022900 Gossypium raimondii HOM05D014341 ORTHO05D011752 3.8e-11 74.3 140 25.7
RcHm_v2.0_Chr1g0331581 Rosa chinensis HOM05D000881 ORTHO05D000666 3.8e-11 74.3 213 27.2
Aa31LG11G5820 Aethionema arabicum HOM05D000881 ORTHO05D000666 5.0e-11 73.9 154 26.6
Carub.0006s0381 Capsella rubella HOM05D000881 ORTHO05D000666 5.0e-11 73.9 82 35.4
QL04p049792 Quercus lobata HOM05D000881 ORTHO05D000666 5.0e-11 73.9 164 30.5
Thecc.10G122500 Theobroma cacao HOM05D014341 ORTHO05D011752 5.0e-11 73.9 206 28.2
MD02G1259500 Malus domestica HOM05D000881 ORTHO05D000666 6.5e-11 73.6 234 26.5
EL10Ac4g08752 Beta vulgaris HOM05D000881 ORTHO05D000666 8.4e-11 73.2 106 35.8
BcaNung05155 Brassica carinata HOM05D000881 ORTHO05D000666 8.4e-11 73.2 106 33.0
Thhalv10014066m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 8.4e-11 73.2 82 34.1
AT5G04890 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 1.1e-10 72.8 85 32.9
Gohir.A05G285600 Gossypium hirsutum HOM05D014341 ORTHO05D011752 1.1e-10 72.8 226 27.0
Gohir.D02G187100 Gossypium hirsutum HOM05D010059 ORTHO05D000666 1.1e-10 72.8 85 35.3
Gorai.005G209500 Gossypium raimondii HOM05D010059 ORTHO05D000666 1.1e-10 72.8 85 35.3
Actinidia24915 Actinidia chinensis HOM05D000881 ORTHO05D000666 1.4e-10 72.4 119 32.8
Manes.10G070600 Manihot esculenta HOM05D000881 ORTHO05D000666 1.9e-10 72.0 125 31.2
Actinidia17465 Actinidia chinensis HOM05D038880 ORTHO05D000666 2.5e-10 71.6 171 30.4
A10p31250 Brassica napus HOM05D000881 ORTHO05D000666 2.5e-10 71.6 178 28.7
HanXRQChr11g0326381 Helianthus annuus HOM05D000881 ORTHO05D000666 2.5e-10 71.6 151 32.5
FAN03G3143 Fragaria x ananassa HOM05D000881 ORTHO05D000666 3.2e-10 71.2 356 22.2
Eucgr.G02656 Eucalyptus grandis HOM05D000881 ORTHO05D000666 4.2e-10 70.9 142 27.5
Gohir.D05G286700 Gossypium hirsutum HOM05D014341 ORTHO05D011752 4.2e-10 70.9 232 26.7
Gorai.009G301700 Gossypium raimondii HOM05D014341 ORTHO05D011752 4.2e-10 70.9 232 26.7
Sp6g37930 Schrenkiella parvula HOM05D000881 ORTHO05D000666 5.5e-10 70.5 176 26.7
C09p71870 Brassica napus HOM05D000881 ORTHO05D000666 7.2e-10 70.1 179 28.5
BcaB05g21742 Brassica carinata HOM05D000881 ORTHO05D000666 9.3e-10 69.7 176 29.0
MD07G1061000 Malus domestica HOM05D000881 ORTHO05D000666 9.3e-10 69.7 89 36.0
Sabra08G0008400 Salix brachista HOM05D000881 ORTHO05D000666 9.3e-10 69.7 251 22.7
BolC9t59936H Brassica oleracea HOM05D000881 ORTHO05D000666 1.6e-09 68.9 178 28.1
Medtr3g007660 Medicago truncatula HOM05D000881 ORTHO05D000666 1.6e-09 68.9 190 25.8
Psat5g229840 Pisum sativum HOM05D000881 ORTHO05D000666 1.6e-09 68.9 245 26.1
TPR.G144 Trifolium pratense HOM05D000881 ORTHO05D000666 1.6e-09 68.9 234 24.8
Lsat_1_v5_gn_1_87140 Lactuca sativa HOM05D000881 ORTHO05D000666 2.1e-09 68.6 107 34.6
MD07G1061100 Malus domestica HOM05D000881 ORTHO05D000666 2.1e-09 68.6 92 33.7
Duzib132G0066 Durio zibethinus HOM05D000881 ORTHO05D000666 2.7e-09 68.2 85 34.1
Glyma.06G316200 Glycine max HOM05D000881 ORTHO05D000666 2.7e-09 68.2 93 30.1
Glyma.04G130100 Glycine max HOM05D000881 ORTHO05D000666 3.5e-09 67.8 93 30.1
Hund06059 Selenicereus undatus HOM05D000881 ORTHO05D000666 3.5e-09 67.8 100 37.0
TWI63G0669 Tripterygium wilfordii HOM05D010059 ORTHO05D000666 4.6e-09 67.4 109 32.1
Actinidia21135 Actinidia chinensis HOM05D001769 ORTHO05D001695 7.9e-09 66.6 100 32.0
ECA232G3228 Erigeron canadensis HOM05D000881 ORTHO05D000666 1.0e-08 66.2 107 33.6
PGR142G0911 Punica granatum HOM05D000881 ORTHO05D000666 1.0e-08 66.2 191 25.7
SalBow6G6574 Salvia bowleyana HOM05D000125 ORTHO05D000120 1.0e-08 66.2 92 31.5
HanXRQChr17g0559031 Helianthus annuus HOM05D000881 ORTHO05D000666 1.3e-08 65.9 107 33.6
TWI38G1417 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 1.3e-08 65.9 103 32.0
CARHR208380 Cardamine hirsuta HOM05D000881 ORTHO05D000080 1.8e-08 65.5 159 27.0
Aqoxy1G00549 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 2.3e-08 65.1 100 29.0
THA.LOC104816480 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 2.3e-08 65.1 102 33.3
unitig_0.g2304 Utricularia gibba HOM05D000881 ORTHO05D000080 2.3e-08 65.1 101 33.7
Cc00_g20150 Coffea canephora HOM05D000881 ORTHO05D000666 3.9e-08 64.3 147 29.3
Aqoxy3G03278 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 5.1e-08 63.9 125 27.2
arahy.Tifrunner.gnm1.ann1.ZVX95B Arachis hypogaea HOM05D000881 ORTHO05D000666 6.7e-08 63.5 87 29.9
Duzib052G0145 Durio zibethinus HOM05D000881 ORTHO05D000666 6.7e-08 63.5 90 27.8
Duzib114G0679 Durio zibethinus HOM05D014341 ORTHO05D011752 6.7e-08 63.5 245 22.0
Sopen01g040680 Solanum pennellii HOM05D000881 ORTHO05D000666 6.7e-08 63.5 194 23.2
MBI11_g07703_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 8.7e-08 63.2 268 20.9
QL04p049805 Quercus lobata HOM05D000881 ORTHO05D000666 8.7e-08 63.2 164 28.7
PGSC0003DMG400008715 Solanum tuberosum HOM05D000881 ORTHO05D000666 1.1e-07 62.8 167 26.3
HanXRQChr16g0516881 Helianthus annuus HOM05D000881 ORTHO05D000666 1.5e-07 62.4 87 29.9
Manes.07G083200 Manihot esculenta HOM05D000881 ORTHO05D000666 1.5e-07 62.4 189 24.3
SalBow4G2822 Salvia bowleyana HOM05D000881 ORTHO05D000666 1.5e-07 62.4 119 31.1
VMungo0647G1281 Vigna mungo HOM05D000881 ORTHO05D000666 1.5e-07 62.4 88 30.7
Migut.N01922 Erythranthe guttata HOM05D000881 ORTHO05D000666 1.9e-07 62.0 98 31.6
Glyma.04G129900 Glycine max HOM05D011778 ORTHO05D012624 1.9e-07 62.0 115 31.3
PGSC0003DMG400027497 Solanum tuberosum HOM05D000881 ORTHO05D000666 1.9e-07 62.0 91 28.6
Atru.chr12.1161 Acer truncatum HOM05D000881 ORTHO05D000666 3.3e-07 61.2 84 28.6
AUR62021735 Chenopodium quinoa HOM05D000881 ORTHO05D000666 3.3e-07 61.2 232 25.0
MBI11_g45239_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 3.3e-07 61.2 164 22.6
Potri.010G245500 Populus trichocarpa HOM05D000881 ORTHO05D000666 3.3e-07 61.2 181 23.8
Thecc.02G162200 Theobroma cacao HOM05D000881 ORTHO05D000666 3.3e-07 61.2 171 26.3
Cfa010462 Carpinus fangiana HOM05D045047 ORTHO05D000666 4.3e-07 60.8 397 21.4
Lalb_Chr18g0049011 Lupinus albus HOM05D000881 ORTHO05D000080 4.3e-07 60.8 193 24.4
Nn2g15728 Nelumbo nucifera HOM05D000881 ORTHO05D000666 5.7e-07 60.5 93 28.0
Atru.chr9.2312 Acer truncatum HOM05D000881 ORTHO05D000666 7.4e-07 60.1 118 28.8
arahy.Tifrunner.gnm1.ann1.PZF4SB Arachis hypogaea HOM05D000881 ORTHO05D000666 9.7e-07 59.7 185 24.9
CDE05G3520 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 9.7e-07 59.7 144 25.7
Medtr8g046245 Medicago truncatula HOM05D000881 ORTHO05D000666 9.7e-07 59.7 152 24.3
Glyma.04G129700 Glycine max HOM05D011778 ORTHO05D012624 1.3e-06 59.3 93 29.0
Glyma.06G315700 Glycine max HOM05D011778 ORTHO05D012624 1.3e-06 59.3 93 29.0
Lsat_1_v5_gn_7_14200 Lactuca sativa HOM05D000881 ORTHO05D000666 1.3e-06 59.3 98 29.6
Cpa.g.sc54.45 Carica papaya HOM05D000881 ORTHO05D000666 1.6e-06 58.9 201 24.9
Gohir.D04G019100 Gossypium hirsutum HOM05D014341 ORTHO05D011752 1.6e-06 58.9 87 26.4
Solyc01g096980.2 Solanum lycopersicum HOM05D000881 ORTHO05D000666 2.2e-06 58.5 172 21.5
TPR.G19878 Trifolium pratense HOM05D000881 ORTHO05D000666 2.2e-06 58.5 87 31.0
Psat1g121560 Pisum sativum HOM05D000881 ORTHO05D000666 2.8e-06 58.2 87 32.2
CDE01G0150 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 3.7e-06 57.8 118 24.6
Oeu022198.1 Olea europaea HOM05D000881 ORTHO05D000666 6.3e-06 57.0 112 25.9
Sed0019713 Sechium edule HOM05D000881 ORTHO05D000666 6.3e-06 57.0 111 27.0
MELO3C012317.2 Cucumis melo HOM05D018703 ORTHO05D000666 8.2e-06 56.6 98 28.6
Glyma.08G230000 Glycine max HOM05D000881 ORTHO05D000666 8.2e-06 56.6 174 27.6
Lsat_1_v5_gn_4_107421 Lactuca sativa HOM05D000881 ORTHO05D000666 8.2e-06 56.6 97 28.9
vmacro16567 Vaccinium macrocarpon HOM05D000881 ORTHO05D000666 8.2e-06 56.6 97 27.8


User provided reference genes

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