Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21171 Brassica carinata HOM05D004391 ORTHO05D005193 5.7e-52 207.2 98 100.0
BraA01t04219Z Brassica rapa HOM05D004391 ORTHO05D005193 3.8e-24 114.8 52 100.0
Thhalv10021877m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 3.8e-24 114.8 52 100.0
Sp3g09180 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.1e-23 113.2 52 98.1
Aa31LG3G3850 Aethionema arabicum HOM05D004391 ORTHO05D005193 2.5e-23 112.1 52 96.2
A05p38380 Brassica napus HOM05D004391 ORTHO05D005193 3.2e-23 111.7 52 98.1
C05p57280 Brassica napus HOM05D004391 ORTHO05D005193 3.2e-23 111.7 52 98.1
BolC5t34384H Brassica oleracea HOM05D004391 ORTHO05D005193 3.2e-23 111.7 52 98.1
BraA05t22629Z Brassica rapa HOM05D004391 ORTHO05D005193 3.2e-23 111.7 52 98.1
AT3G10860 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 1.2e-22 109.8 52 94.2
Carub.0003s1010 Capsella rubella HOM05D004391 ORTHO05D005193 1.2e-22 109.8 52 94.2
CARHR085430 Cardamine hirsuta HOM05D004391 ORTHO05D005193 1.2e-22 109.8 52 94.2
BolC1t05350H Brassica oleracea HOM05D004391 ORTHO05D005193 1.6e-22 109.4 52 98.1
THA.LOC104823167 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 2.1e-22 109.0 52 90.4
AL3G22380 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 6.1e-22 107.5 52 92.3
THA.LOC109117202 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 6.1e-22 107.5 52 88.5
THA.LOC104816504 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 8.0e-22 107.1 52 88.5
Thhalv10015197m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 3.3e-20 101.7 52 88.5
Sp6g37680 Schrenkiella parvula HOM05D004391 ORTHO05D005193 9.7e-20 100.1 52 86.5
Aa31LG11G6460 Aethionema arabicum HOM05D004391 ORTHO05D005193 1.3e-19 99.8 52 84.6
AL6G15270 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 2.8e-19 98.6 52 86.5
AT5G05370 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 2.8e-19 98.6 52 86.5
Sp6g37450 Schrenkiella parvula HOM05D004391 ORTHO05D005193 3.7e-19 98.2 52 84.6
A03p02270 Brassica napus HOM05D004391 ORTHO05D005193 4.8e-19 97.8 52 84.6
Thhalv10015196m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 4.8e-19 97.8 52 84.6
BcaC06g32250 Brassica carinata HOM05D004391 ORTHO05D005193 8.2e-19 97.1 52 82.7
A10p30830 Brassica napus HOM05D004391 ORTHO05D005193 8.2e-19 97.1 52 82.7
C09p71330 Brassica napus HOM05D004391 ORTHO05D005193 8.2e-19 97.1 52 82.7
BolC9t59895H Brassica oleracea HOM05D004391 ORTHO05D005193 8.2e-19 97.1 52 82.7
BraA10t45125Z Brassica rapa HOM05D004391 ORTHO05D005193 8.2e-19 97.1 52 82.7
Carub.0006s0430 Capsella rubella HOM05D004391 ORTHO05D005193 1.1e-18 96.7 52 82.7
Manes.18G125100 Manihot esculenta HOM05D004391 ORTHO05D005193 1.1e-18 96.7 52 80.8
Aa31LG3G4110 Aethionema arabicum HOM05D004391 ORTHO05D005193 1.8e-18 95.9 73 67.1
BcaB01g05713 Brassica carinata HOM05D004391 ORTHO05D005193 3.1e-18 95.1 52 82.7
CARHR207860 Cardamine hirsuta HOM05D004391 ORTHO05D005193 5.3e-18 94.4 52 80.8
Eucgr.G03166 Eucalyptus grandis HOM05D004391 ORTHO05D005193 5.3e-18 94.4 52 78.8
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 5.3e-18 94.4 53 83.0
Peaxi162Scf00131g10129 Petunia axillaris HOM05D004391 ORTHO05D005193 5.3e-18 94.4 52 78.8
Nitab4.5_0000105g0300 Nicotiana tabacum HOM05D004391 ORTHO05D005193 7.0e-18 94.0 52 78.8
TPR.G7542 Trifolium pratense HOM05D004391 ORTHO05D005193 7.0e-18 94.0 52 80.8
Nn5g27585 Nelumbo nucifera HOM05D004391 ORTHO05D005193 1.2e-17 93.2 57 71.9
PGR142G4161 Punica granatum HOM05D004391 ORTHO05D005193 1.2e-17 93.2 52 76.9
Gorai.012G013200 Gossypium raimondii HOM05D004391 ORTHO05D005193 1.6e-17 92.8 53 79.2
Solyc06g082680.4 Solanum lycopersicum HOM05D004391 ORTHO05D005193 1.6e-17 92.8 52 80.8
Sopen06g034070 Solanum pennellii HOM05D004391 ORTHO05D005193 1.6e-17 92.8 52 80.8
PGSC0003DMG400030477 Solanum tuberosum HOM05D004391 ORTHO05D005193 1.6e-17 92.8 52 80.8
CAN.G874.64 Capsicum annuum HOM05D004391 ORTHO05D005193 2.0e-17 92.4 52 78.8
Nitab4.5_0003194g0030 Nicotiana tabacum HOM05D004391 ORTHO05D005193 2.0e-17 92.4 52 76.9
CiPaw.05G185700 Carya illinoinensis HOM05D004391 ORTHO05D005193 3.5e-17 91.7 52 76.9
Duzib114G0048 Durio zibethinus HOM05D004391 ORTHO05D005193 4.5e-17 91.3 52 76.9
Gohir.A05G404700 Gossypium hirsutum HOM05D004391 ORTHO05D005193 4.5e-17 91.3 52 78.8
Nitab4.5_0000311g0070 Nicotiana tabacum HOM05D004391 ORTHO05D005193 4.5e-17 91.3 52 75.0
CSS0036971 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 5.9e-17 90.9 52 75.0
Gohir.D13G008800 Gossypium hirsutum HOM05D004391 ORTHO05D005193 5.9e-17 90.9 52 78.8
Nn5g26793 Nelumbo nucifera HOM05D004391 ORTHO05D005193 7.7e-17 90.5 52 71.2
Peaxi162Scf00455g00003 Petunia axillaris HOM05D004391 ORTHO05D005193 7.7e-17 90.5 52 76.9
Cc01_g15470 Coffea canephora HOM05D004391 ORTHO05D005193 1.0e-16 90.1 52 76.9
Gohir.D04G011000 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.0e-16 90.1 52 78.8
Lalb_Chr10g0103971 Lupinus albus HOM05D004391 ORTHO05D005193 1.0e-16 90.1 52 75.0
Potri.019G132000 Populus trichocarpa HOM05D004391 ORTHO05D005193 1.0e-16 90.1 52 75.0
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 1.3e-16 89.7 62 66.1
Oeu025053.1 Olea europaea HOM05D004391 ORTHO05D005193 1.3e-16 89.7 52 73.1
Solyc06g007540.3 Solanum lycopersicum HOM05D004391 ORTHO05D005193 1.3e-16 89.7 52 78.8
Sopen06g002450 Solanum pennellii HOM05D004391 ORTHO05D005193 1.3e-16 89.7 52 78.8
Lalb_Chr04g0251641 Lupinus albus HOM05D004391 ORTHO05D005193 1.7e-16 89.4 52 73.1
TWI09G0083 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 1.7e-16 89.4 52 73.1
TWI53G1180 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 1.7e-16 89.4 52 75.0
LjContig00141g0006354 Lotus japonicus HOM05D004391 ORTHO05D005193 2.2e-16 89.0 52 76.9
TAR633G0676 Trochodendron aralioides HOM05D004391 ORTHO05D005193 2.2e-16 89.0 54 72.2
ClCG08G017940 Citrullus lanatus HOM05D004391 ORTHO05D005193 2.9e-16 88.6 52 75.0
Duzib128G1816 Durio zibethinus HOM05D004391 ORTHO05D005193 2.9e-16 88.6 52 75.0
Cfa009172 Carpinus fangiana HOM05D004391 ORTHO05D005193 3.8e-16 88.2 52 71.2
Gohir.A13G008200 Gossypium hirsutum HOM05D004391 ORTHO05D005193 3.8e-16 88.2 52 76.9
Prupe.6G038800 Prunus persica HOM05D004391 ORTHO05D005193 3.8e-16 88.2 52 73.1
CAN.G181.27 Capsicum annuum HOM05D004391 ORTHO05D005193 5.0e-16 87.8 52 73.1
MD13G1094500 Malus domestica HOM05D004391 ORTHO05D005193 5.0e-16 87.8 52 73.1
Sc15g0002370 Simmondsia chinensis HOM05D004391 ORTHO05D005193 5.0e-16 87.8 52 71.2
GSVIVG01024232001 Vitis vinifera HOM05D004391 ORTHO05D005193 5.0e-16 87.8 57 70.2
CSS0038074 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 6.5e-16 87.4 52 71.2
Haze_12207 Corylus avellana HOM05D004391 ORTHO05D005193 6.5e-16 87.4 52 71.2
Glyma.02G237700 Glycine max HOM05D004391 ORTHO05D005193 6.5e-16 87.4 52 75.0
Os06g0175900 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 8.5e-16 87.0 52 71.2
Os06g0177000 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 8.5e-16 87.0 52 71.2
Zm00001eb375180 Zea mays HOM05D004391 ORTHO05D005193 8.5e-16 87.0 52 73.1
CANSAT80G1344 Cannabis sativa HOM05D004391 ORTHO05D005193 1.1e-15 86.7 52 69.2
Glyma.14G206700 Glycine max HOM05D004391 ORTHO05D005193 1.1e-15 86.7 52 75.0
Phvul.008G244100 Phaseolus vulgaris HOM05D004391 ORTHO05D005193 1.1e-15 86.7 52 75.0
MD03G1047800 Malus domestica HOM05D004391 ORTHO05D005193 1.5e-15 86.3 52 71.2
MD16G1095600 Malus domestica HOM05D004391 ORTHO05D005193 1.5e-15 86.3 52 71.2
GSVIVG01024535001 Vitis vinifera HOM05D004391 ORTHO05D005193 1.5e-15 86.3 57 68.4
arahy.Tifrunner.gnm1.ann1.M2MMUV Arachis hypogaea HOM05D004391 ORTHO05D005193 1.9e-15 85.9 51 74.5
TAR369G0568 Trochodendron aralioides HOM05D004391 ORTHO05D005193 1.9e-15 85.9 52 71.2
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 3.2e-15 85.1 54 66.7
Prupe.1G250900 Prunus persica HOM05D004391 ORTHO05D005193 4.2e-15 84.7 57 66.7
RcHm_v2.0_Chr4g0441891 Rosa chinensis HOM05D004391 ORTHO05D005193 4.2e-15 84.7 52 67.3
Aqoxy2G00689 Aquilegia oxysepala HOM05D004391 ORTHO05D005193 5.5e-15 84.3 57 64.9
MELO3C010670.2 Cucumis melo HOM05D004391 ORTHO05D005193 5.5e-15 84.3 52 69.2
Cpa.g.sc2.267 Carica papaya HOM05D004391 ORTHO05D005193 7.2e-15 84.0 52 69.2
RcHm_v2.0_Chr5g0073771 Rosa chinensis HOM05D004391 ORTHO05D005193 7.2e-15 84.0 52 69.2
Thecc.10G186500 Theobroma cacao HOM05D004391 ORTHO05D005193 7.2e-15 84.0 52 71.2
FvH4_3g40960 Fragaria vesca HOM05D004391 ORTHO05D005193 9.4e-15 83.6 52 69.2
FAN11G0346 Fragaria x ananassa HOM05D004391 ORTHO05D005193 9.4e-15 83.6 52 69.2
FAN16G3113 Fragaria x ananassa HOM05D004391 ORTHO05D005193 9.4e-15 83.6 52 69.2
Ah.05g177740 Amaranthus hybridus HOM05D004391 ORTHO05D005193 1.6e-14 82.8 52 67.3
COL.COLO4_19488 Corchorus olitorius HOM05D004391 ORTHO05D005193 2.1e-14 82.4 52 69.2
Sed0004860 Sechium edule HOM05D004391 ORTHO05D005193 2.1e-14 82.4 52 69.2
HPP92_003137 Vanilla planifolia HOM05D004391 ORTHO05D005193 2.1e-14 82.4 57 64.9
unitig_747.g21439 Utricularia gibba HOM05D001024 ORTHO05D000878 2.7e-14 82.0 52 67.3
Hma1.2p1_0170F.1_g075340 Hydrangea macrophylla HOM05D004391 ORTHO05D005193 3.6e-14 81.6 57 61.4
THA.LOC104823179 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 4.7e-14 81.3 38 92.1
Ciclev10033444m.g Citrus clementina HOM05D004391 ORTHO05D005193 6.1e-14 80.9 52 69.2
Ciclev10013576m.g Citrus clementina HOM05D004391 ORTHO05D005193 8.0e-14 80.5 52 67.3
Ciclev10010097m.g Citrus clementina HOM05D004391 ORTHO05D005193 1.4e-13 79.7 52 67.3
FvH4_4g32870 Fragaria vesca HOM05D004391 ORTHO05D005193 1.4e-13 79.7 52 63.5
FAN12G3281 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.4e-13 79.7 52 63.5
FAN21G2439 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.4e-13 79.7 65 60.0
FAN07G1869 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.3e-13 79.0 52 63.5
FAN17G0118 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.3e-13 79.0 52 63.5
FAN22G1549 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.3e-13 79.0 52 63.5
AUR62013781 Chenopodium quinoa HOM05D004391 ORTHO05D005193 3.0e-13 78.6 52 65.4
HPP92_000080 Vanilla planifolia HOM05D004391 ORTHO05D005193 3.0e-13 78.6 52 63.5
ECA236G4577 Erigeron canadensis HOM05D004391 ORTHO05D005193 8.8e-13 77.0 52 65.4
AUR62023375 Chenopodium quinoa HOM05D004391 ORTHO05D005193 2.0e-12 75.9 52 63.5
VMungo0647G0523 Vigna mungo HOM05D004391 ORTHO05D005193 2.6e-12 75.5 38 84.2
QL03p059558 Quercus lobata HOM05D004391 ORTHO05D005193 4.4e-12 74.7 74 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2485 Anthoceros agrestis HOM05D004391 ORTHO05D005193 5.7e-12 74.3 52 61.5
HanXRQChr10g0292911 Helianthus annuus HOM05D004391 ORTHO05D005193 5.7e-12 74.3 52 59.6
Nitab4.5_0002167g0040 Nicotiana tabacum HOM05D004391 ORTHO05D005193 7.5e-12 73.9 45 75.6
CBR_g1035 Chara braunii HOM05D004391 ORTHO05D005193 9.8e-12 73.6 52 59.6
Migut.D00804 Erythranthe guttata HOM05D004391 ORTHO05D005193 9.8e-12 73.6 52 61.5
Nitab4.5_0002902g0130 Nicotiana tabacum HOM05D004391 ORTHO05D005193 9.8e-12 73.6 38 81.6
Pp3c7_21160 Physcomitrium patens HOM05D004391 ORTHO05D005193 9.8e-12 73.6 51 58.8
CsaV3_2G024700 Cucumis sativus L. HOM05D004391 ORTHO05D005193 1.3e-11 73.2 58 60.3
Gorai.013G009600 Gossypium raimondii HOM05D004391 ORTHO05D005193 1.3e-11 73.2 38 84.2
PGSC0003DMG400020649 Solanum tuberosum HOM05D004391 ORTHO05D005193 1.3e-11 73.2 38 84.2
HanXRQChr05g0158631 Helianthus annuus HOM05D004391 ORTHO05D005193 1.7e-11 72.8 52 61.5
vmacro02862 Vaccinium macrocarpon HOM05D004391 ORTHO05D005193 1.7e-11 72.8 40 75.0
ECA248G3374 Erigeron canadensis HOM05D004391 ORTHO05D005193 2.2e-11 72.4 52 59.6
Pp3c11_2590 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.8e-11 72.0 51 56.9
Zm00001eb281780 Zea mays HOM05D004391 ORTHO05D005193 2.8e-11 72.0 38 78.9
Pp3c1_1570 Physcomitrium patens HOM05D004391 ORTHO05D005193 3.7e-11 71.6 51 56.9
Lsat_1_v5_gn_5_177220 Lactuca sativa HOM05D004391 ORTHO05D005193 4.8e-11 71.2 52 55.8
Potri.013G159700 Populus trichocarpa HOM05D004391 ORTHO05D005193 6.3e-11 70.9 38 78.9
SHI19278 Sapria himalayana HOM05D004391 ORTHO05D005193 1.1e-10 70.1 38 76.3
FvH4_4g07960 Fragaria vesca HOM05D004391 ORTHO05D005193 1.4e-10 69.7 52 53.8
Mapoly0022s0089 Marchantia polymorpha HOM05D004391 ORTHO05D005193 7.0e-10 67.4 50 50.0
C02p02320 Brassica napus HOM05D004391 ORTHO05D005193 2.0e-09 65.9 52 65.4
BolC2t06197H Brassica oleracea HOM05D004391 ORTHO05D005193 2.0e-09 65.9 52 65.4
SalBow3G4275 Salvia bowleyana HOM05D004391 ORTHO05D005193 2.0e-09 65.9 82 43.9
Lsat_1_v5_gn_9_13380 Lactuca sativa HOM05D000838 ORTHO05D000656 5.0e-08 61.2 68 45.6
SEGI_31881 Sequoiadendron giganteum HOM05D004391 ORTHO05D005193 4.2e-07 58.2 46 50.0
Lsat_1_v5_gn_8_98921 Lactuca sativa HOM05D004391 ORTHO05D005193 1.2e-06 56.6 38 63.2
SGA_v2.0_scaffold122G33334 Striga asiatica HOM05D004391 ORTHO05D005193 1.6e-06 56.2 38 63.2
Lsat_1_v5_gn_9_13340 Lactuca sativa HOM05D004391 ORTHO05D005193 2.1e-06 55.8 34 70.6
SMO117G0077 Selaginella moellendorffii HOM05D004391 ORTHO05D005193 4.7e-06 54.7 55 47.3
Lsat_1_v5_gn_8_98901 Lactuca sativa HOM05D004391 ORTHO05D005193 6.1e-06 54.3 34 70.6


User provided reference genes

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