Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 0.0e+00 1469.1 714 100.0
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 0.0e+00 1336.2 731 89.7
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 0.0e+00 1220.7 681 87.4
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 0.0e+00 1217.2 716 83.8
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 0.0e+00 1210.3 711 83.1
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 0.0e+00 1201.4 718 82.6
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 0.0e+00 1184.5 682 83.9
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 0.0e+00 1167.5 715 81.1
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 0.0e+00 1130.9 679 81.7
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 0.0e+00 1082.0 680 77.8
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.6e-303 1045.0 679 77.8
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 9.1e-293 1010.0 699 71.5
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.2e-292 1009.6 669 73.2
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 5.9e-292 1007.3 668 73.7
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 6.6e-291 1003.8 682 72.7
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 6.6e-291 1003.8 668 73.2
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.5e-290 1002.7 681 72.2
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-280 969.1 668 70.4
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.7e-278 961.4 668 69.9
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.7e-278 961.4 668 69.9
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 6.4e-278 960.7 669 70.4
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 8.3e-278 960.3 668 69.9
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 7.0e-277 957.2 695 67.8
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 7.3e-274 947.2 727 65.6
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.6e-260 902.9 671 66.2
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.9e-227 792.0 735 54.7
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.1e-224 783.9 733 54.4
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 2.6e-223 779.2 734 53.4
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 5.8e-223 778.1 732 52.9
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.6e-223 777.7 676 56.1
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 3.8e-222 775.4 735 53.6
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.9e-221 773.1 446 86.1
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 4.2e-221 771.9 712 53.1
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 9.3e-221 770.8 733 53.6
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.2e-220 770.4 731 53.5
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.5e-220 768.8 711 54.0
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.5e-218 763.5 740 52.8
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.5e-218 762.7 715 53.4
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 2.5e-218 762.7 732 53.8
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 3.3e-218 762.3 736 52.3
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 9.7e-218 760.8 683 53.3
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 9.7e-218 760.8 731 52.8
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 9.7e-218 760.8 726 52.8
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.3e-217 760.4 771 50.8
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 2.2e-217 759.6 725 52.6
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 3.7e-217 758.8 748 51.2
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 6.3e-217 758.1 748 51.1
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.8e-216 756.5 743 52.2
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.4e-216 756.1 672 53.9
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 6.9e-216 754.6 725 52.4
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 2.6e-215 752.7 723 52.4
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.7e-215 751.1 746 52.7
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.3e-214 750.4 729 51.0
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.7e-214 750.0 661 54.8
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 2.9e-214 749.2 699 53.5
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 6.5e-214 748.0 726 51.7
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 8.5e-214 747.7 717 51.7
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.4e-213 746.9 716 52.7
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 2.5e-213 746.1 723 52.1
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 4.2e-213 745.3 732 52.0
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.2e-212 743.8 660 53.9
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.6e-212 743.4 719 52.3
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.1e-212 743.0 660 54.1
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 2.1e-212 743.0 716 51.3
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.0e-211 740.7 679 53.6
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.8e-211 740.0 711 51.2
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.0e-211 739.2 752 51.7
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 5.1e-211 738.4 720 51.9
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 6.7e-211 738.0 670 54.3
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.0e-210 736.5 668 53.4
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 4.3e-210 735.3 703 52.1
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.3e-210 735.3 771 50.1
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.7e-210 734.9 731 51.2
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 7.4e-210 734.6 739 50.6
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 9.7e-210 734.2 737 50.7
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 8.2e-209 731.1 682 52.8
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.4e-208 729.6 726 48.9
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 4.1e-208 728.8 733 50.3
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.3e-208 728.4 720 51.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 9.1e-208 727.6 722 51.4
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 2.0e-207 726.5 720 50.0
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 2.6e-207 726.1 721 50.2
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 4.5e-207 725.3 709 52.0
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 5.9e-207 724.9 675 51.6
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.0e-206 724.2 671 52.0
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.3e-206 723.8 726 50.0
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 5.0e-206 721.8 687 52.3
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.2e-204 717.2 719 50.6
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.2e-204 717.2 716 50.7
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 5.1e-203 711.8 675 51.3
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.5e-202 710.3 899 44.6
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 3.7e-201 705.7 712 51.0
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 5.3e-200 701.8 678 50.0
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 7.0e-200 701.4 704 50.1
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.2e-199 700.7 716 51.3
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.5e-199 700.3 614 55.4
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.5e-199 699.1 706 50.8
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 7.7e-199 698.0 706 50.8
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.0e-195 687.6 629 52.9
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 5.7e-194 681.8 676 51.8
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.7e-193 680.2 682 50.4
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 2.2e-193 679.9 716 50.1
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.8e-193 679.5 621 54.4
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 6.3e-193 678.3 701 49.2
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.2e-190 669.8 713 48.8
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.2e-190 669.8 598 55.0
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 5.5e-189 665.2 682 48.8
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 7.2e-189 664.8 683 49.6
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 2.1e-188 663.3 669 51.1
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 4.0e-187 659.1 643 51.5
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.6e-186 656.4 717 47.7
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 4.4e-186 655.6 730 47.1
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 5.7e-186 655.2 598 54.7
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 9.7e-186 654.4 674 49.7
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 2.4e-184 649.8 738 45.0
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-183 647.5 670 50.3
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.6e-183 647.1 671 48.9
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.9e-183 645.2 775 45.2
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.9e-183 645.2 734 47.4
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.3e-182 644.0 689 48.3
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 7.2e-181 638.3 339 88.5
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.8e-179 633.6 683 49.2
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.2e-172 610.9 691 49.5
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.1e-172 608.6 674 47.9
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 8.9e-171 604.7 687 47.7
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.7e-161 573.9 688 44.6
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.4e-160 570.1 732 42.5
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 2.4e-152 543.5 680 42.9
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 2.7e-151 540.0 537 50.8
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 3.9e-150 536.2 683 42.9
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.2e-148 531.2 712 42.6
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.8e-147 527.3 534 50.6
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.5e-141 506.9 563 47.6
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 3.4e-138 496.5 426 54.2
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.5e-133 481.1 550 45.3
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 4.0e-123 446.4 386 56.2
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 8.4e-113 412.1 236 88.1
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 4.2e-112 409.8 299 63.2
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.3e-108 398.3 371 59.3
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 2.2e-105 387.5 239 83.3
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 9.3e-104 382.1 208 89.4
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 4.3e-101 373.2 460 41.5
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 3.9e-94 350.1 231 69.3
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 1.7e-92 344.7 570 36.3
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 4.2e-88 330.1 314 48.1
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 5.9e-82 309.7 400 42.8
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.3e-81 308.5 396 41.4
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 3.6e-79 300.4 574 32.8
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 6.3e-76 289.7 550 33.5
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.5e-61 241.9 225 57.8
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 7.3e-56 223.0 156 67.9
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.4e-51 208.8 333 37.2
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.0e-51 206.5 219 49.3
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.6e-50 205.3 146 63.0
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 5.2e-46 190.3 99 88.9
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 5.2e-46 190.3 99 88.9
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 5.2e-46 190.3 99 88.9
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-38 166.0 117 62.4
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 2.6e-37 161.4 115 61.7
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 3.5e-34 151.0 247 38.5
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 3.5e-26 124.4 158 41.1
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.1e-24 119.4 210 33.3
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 8.1e-23 113.2 59 89.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 7.6e-21 106.7 64 85.9
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 9.9e-21 106.3 187 36.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.5e-16 92.4 45 91.1
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.5e-16 92.4 45 91.1
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.6e-15 87.8 269 26.8
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-13 82.8 77 50.6
BraA01t04202Z Brassica rapa HOM05D004070 ORTHO05D107995 2.0e-13 82.0 46 87.0
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.1e-11 76.3 225 26.7
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 3.0e-09 68.2 153 34.0
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.5e-08 65.9 210 27.1


User provided reference genes

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