Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 2.7e-60 235.0 106 100.0
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 5.0e-54 214.2 96 100.0
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 5.0e-54 214.2 96 100.0
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.7e-47 191.8 99 88.9
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 2.7e-47 191.8 99 88.9
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.2e-46 188.7 99 85.9
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 2.9e-46 188.3 99 86.9
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.8e-46 188.0 99 85.9
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 6.5e-46 187.2 99 85.9
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.1e-45 186.4 99 83.8
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.5e-45 184.1 99 83.8
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 7.2e-45 183.7 99 83.8
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.6e-44 182.6 99 81.8
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 2.1e-44 182.2 99 82.8
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.1e-44 182.2 99 82.8
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.8e-44 181.8 99 82.8
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.8e-44 181.8 99 81.8
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.6e-44 181.4 99 81.8
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 4.7e-44 181.0 99 81.8
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 4.7e-44 181.0 99 81.8
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 4.7e-44 181.0 99 81.8
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 4.7e-44 181.0 99 81.8
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 6.1e-44 180.6 99 81.8
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 6.1e-44 180.6 99 81.8
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 6.1e-44 180.6 99 81.8
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.4e-43 179.5 99 81.8
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 4.0e-43 177.9 96 84.4
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 2.6e-42 175.3 99 78.8
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 5.7e-42 174.1 99 77.8
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 4.9e-41 171.0 99 76.8
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.4e-40 168.7 99 75.8
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.1e-40 168.3 99 76.8
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.6e-39 166.0 99 75.8
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.6e-39 166.0 99 73.7
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 2.7e-39 165.2 99 73.7
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 2.7e-39 165.2 99 76.8
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.5e-39 164.9 99 75.8
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 4.5e-39 164.5 99 72.7
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 4.5e-39 164.5 99 76.8
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 4.5e-39 164.5 99 75.8
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 5.9e-39 164.1 99 71.7
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 7.8e-39 163.7 99 74.7
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.0e-38 163.3 99 73.7
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.0e-38 163.3 99 73.7
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.3e-38 162.9 99 73.7
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.7e-38 162.5 99 71.7
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.7e-38 162.5 99 71.7
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.7e-38 162.5 99 74.7
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 2.3e-38 162.2 99 72.7
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.3e-38 162.2 99 71.7
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.9e-38 161.8 99 72.7
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 3.8e-38 161.4 99 72.7
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 3.8e-38 161.4 99 71.7
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 5.0e-38 161.0 99 72.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 5.0e-38 161.0 99 73.7
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 6.6e-38 160.6 99 70.7
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 8.6e-38 160.2 99 71.7
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 8.6e-38 160.2 99 72.7
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 8.6e-38 160.2 99 71.7
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.1e-37 159.8 99 72.7
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 1.1e-37 159.8 99 69.7
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.1e-37 159.8 99 71.7
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.5e-37 159.5 99 72.7
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-37 159.5 99 70.7
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.5e-37 159.5 99 70.7
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.5e-37 159.5 99 70.7
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.5e-37 159.5 99 70.7
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.9e-37 159.1 99 72.7
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.9e-37 159.1 99 72.7
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.9e-37 159.1 99 70.7
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 2.5e-37 158.7 99 71.7
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.3e-37 158.3 99 74.7
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 3.3e-37 158.3 99 73.7
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 3.3e-37 158.3 99 70.7
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 3.3e-37 158.3 99 72.7
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 4.3e-37 157.9 99 72.7
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 4.3e-37 157.9 99 71.7
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 4.3e-37 157.9 99 70.7
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 5.6e-37 157.5 99 69.7
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 5.6e-37 157.5 99 70.7
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 5.6e-37 157.5 99 72.7
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 9.5e-37 156.8 99 72.7
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.5e-37 156.8 99 69.7
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 9.5e-37 156.8 99 70.7
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.2e-36 156.4 99 70.7
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 2.1e-36 155.6 99 69.7
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 2.8e-36 155.2 99 70.7
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 2.8e-36 155.2 101 68.3
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.6e-36 154.8 99 71.7
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.6e-36 154.8 125 60.0
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 4.7e-36 154.5 99 71.7
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 6.1e-36 154.1 99 67.7
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 8.0e-36 153.7 99 70.7
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 8.0e-36 153.7 99 71.7
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.0e-35 153.3 99 70.7
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.0e-35 153.3 99 68.7
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.4e-35 152.9 99 66.7
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.2e-35 151.0 99 70.7
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 6.8e-35 150.6 99 67.7
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 8.9e-35 150.2 99 67.7
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 8.9e-35 150.2 99 68.7
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.2e-34 149.8 99 65.7
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 5.7e-34 147.5 99 68.7
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 7.5e-34 147.1 99 66.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 9.8e-34 146.7 99 67.7
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 9.8e-34 146.7 128 57.0
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.3e-33 146.4 90 73.3
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.2e-33 145.6 99 69.7
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.2e-33 145.6 99 65.7
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.9e-33 145.2 99 65.7
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.4e-32 142.1 99 68.7
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 2.4e-32 142.1 99 64.6
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.4e-32 141.0 100 66.0
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.4e-32 141.0 100 66.0
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 9.2e-32 140.2 99 67.7
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 9.2e-32 140.2 99 68.7
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 9.2e-32 140.2 148 50.0
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.2e-31 139.8 99 66.7
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.6e-31 139.4 99 68.7
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.6e-31 139.4 99 63.6
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.7e-31 138.7 72 84.7
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 4.6e-31 137.9 97 68.0
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.0e-30 136.7 100 63.0
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.0e-30 136.7 99 63.6
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.7e-30 136.0 99 61.6
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 2.3e-30 135.6 99 65.7
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 3.0e-30 135.2 99 65.7
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 3.0e-30 135.2 99 60.6
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.9e-30 134.8 99 64.6
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.6e-30 134.0 99 63.6
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 4.3e-29 131.3 98 62.2
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.8e-27 125.9 72 77.8
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.6e-26 122.1 104 55.8
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.6e-26 122.1 69 79.7
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 5.4e-24 114.4 61 83.6
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.7e-23 112.1 99 57.6
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 7.8e-23 110.5 99 51.5
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 2.5e-21 105.5 99 49.5
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 9.8e-18 93.6 57 70.2
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 3.5e-15 85.1 62 58.1
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 2.3e-14 82.4 43 90.7
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 9.5e-13 77.0 99 43.4
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.9e-08 62.8 53 56.6
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.7e-06 56.2 53 56.6
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.3e-06 55.8 43 58.1


User provided reference genes

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