Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 2.9e-79 298.5 154 100.0
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 2.8e-74 282.0 154 94.2
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 2.8e-74 282.0 154 94.2
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 2.8e-74 282.0 154 94.2
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 2.3e-68 262.3 153 86.3
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 5.7e-67 257.7 154 87.0
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 3.7e-66 255.0 154 85.7
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 4.1e-65 251.5 153 83.0
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 2.0e-64 249.2 153 83.0
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 2.8e-61 238.8 153 81.7
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 6.8e-60 234.2 153 81.0
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 2.9e-58 228.8 154 77.9
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 2.9e-58 228.8 154 77.9
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.9e-58 228.0 151 80.1
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 7.8e-56 220.7 151 78.1
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 5.6e-54 214.5 123 86.2
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.4e-49 199.1 151 72.8
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.1e-49 198.4 128 78.1
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.6e-48 196.4 138 69.6
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 2.7e-48 195.7 128 75.8
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.7e-48 195.7 120 78.3
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.0e-47 193.7 128 75.0
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.9e-47 191.8 120 79.2
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 6.6e-47 191.0 131 72.5
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.1e-46 190.3 119 79.8
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 5.8e-43 177.9 172 55.2
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.9e-42 175.6 134 63.4
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 3.7e-42 175.3 134 63.4
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.7e-42 175.3 134 63.4
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.3e-42 174.1 130 64.6
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.1e-41 171.0 134 61.9
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.1e-41 171.0 134 61.9
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 6.0e-40 167.9 127 63.0
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.0e-39 167.2 127 64.6
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.3e-39 166.8 132 60.6
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.7e-39 166.4 128 60.9
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 2.3e-39 166.0 132 62.9
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 5.1e-39 164.9 132 60.6
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 8.6e-39 164.1 132 62.9
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.1e-38 163.7 126 62.7
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.1e-38 163.7 128 59.4
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.5e-38 163.3 142 56.3
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.5e-38 163.3 125 63.2
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 2.5e-38 162.5 126 61.9
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 2.5e-38 162.5 127 62.2
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 3.3e-38 162.2 127 63.0
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.3e-38 162.2 125 62.4
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 5.6e-38 161.4 125 62.4
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 5.6e-38 161.4 151 55.0
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 7.3e-38 161.0 129 59.7
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 9.5e-38 160.6 131 57.3
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 9.5e-38 160.6 125 61.6
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.2e-37 160.2 127 59.8
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.2e-37 160.2 128 60.2
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.2e-37 160.2 127 60.6
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.2e-37 160.2 125 61.6
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 2.8e-37 159.1 126 60.3
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 2.8e-37 159.1 124 61.3
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 2.8e-37 159.1 120 64.2
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.6e-37 158.7 123 61.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 4.7e-37 158.3 129 56.6
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 8.1e-37 157.5 120 66.7
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 8.1e-37 157.5 126 61.1
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 8.1e-37 157.5 155 54.8
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 1.1e-36 157.1 120 63.3
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 1.1e-36 157.1 127 59.1
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 1.1e-36 157.1 127 61.4
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.1e-36 157.1 127 61.4
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 1.4e-36 156.8 140 57.9
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.8e-36 156.4 127 59.8
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.8e-36 156.4 132 57.6
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.8e-36 156.4 127 62.2
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 2.3e-36 156.0 120 65.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.3e-36 156.0 120 63.3
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 3.1e-36 155.6 123 60.2
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 3.1e-36 155.6 121 63.6
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 3.1e-36 155.6 120 63.3
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 4.0e-36 155.2 120 63.3
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 4.0e-36 155.2 118 61.9
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.0e-36 155.2 126 58.7
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 4.0e-36 155.2 120 63.3
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 4.0e-36 155.2 127 60.6
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 5.2e-36 154.8 127 60.6
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 5.2e-36 154.8 128 57.8
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 5.2e-36 154.8 131 57.3
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 5.2e-36 154.8 153 52.3
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 6.8e-36 154.5 126 61.9
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 6.8e-36 154.5 127 55.9
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 8.9e-36 154.1 123 63.4
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 8.9e-36 154.1 124 62.1
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.2e-35 153.7 122 60.7
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.2e-35 153.7 122 63.1
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.2e-35 153.7 124 61.3
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.5e-35 153.3 125 59.2
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.5e-35 153.3 121 60.3
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.5e-35 153.3 124 60.5
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.0e-35 152.9 125 60.0
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.0e-35 152.9 124 61.3
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 2.0e-35 152.9 125 59.2
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 2.6e-35 152.5 127 59.8
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.4e-35 152.1 120 62.5
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 4.4e-35 151.8 121 60.3
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 5.8e-35 151.4 126 61.1
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 5.8e-35 151.4 120 63.3
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 5.8e-35 151.4 121 58.7
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 7.6e-35 151.0 126 58.7
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 7.6e-35 151.0 121 60.3
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 7.6e-35 151.0 124 59.7
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.3e-34 150.2 127 57.5
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.3e-34 150.2 123 57.7
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.3e-34 150.2 128 56.2
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.7e-34 149.8 120 60.0
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.2e-34 149.4 126 59.5
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.2e-34 149.4 120 60.8
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 2.2e-34 149.4 123 61.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.2e-34 149.4 126 57.9
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 2.9e-34 149.1 121 62.0
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.9e-34 149.1 123 56.9
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 3.7e-34 148.7 127 56.7
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 4.9e-34 148.3 124 61.3
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 4.9e-34 148.3 118 58.5
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 4.9e-34 148.3 124 57.3
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.4e-34 147.9 120 60.8
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 6.4e-34 147.9 120 60.8
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.4e-33 146.7 120 59.2
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.1e-33 145.2 120 60.8
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 9.2e-33 144.1 120 59.2
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 9.2e-33 144.1 120 59.2
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.2e-32 143.7 131 55.0
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.2e-32 143.7 135 54.1
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 1.6e-32 143.3 120 56.7
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.6e-32 143.3 120 58.3
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 2.1e-32 142.9 131 54.2
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.7e-32 142.5 121 55.4
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.0e-31 140.6 122 57.4
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.3e-31 140.2 131 53.4
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 3.9e-31 138.7 119 58.8
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.5e-30 136.7 110 58.2
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.3e-30 135.2 115 55.7
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 4.3e-30 135.2 120 52.5
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.2e-29 133.7 143 48.3
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.8e-29 132.5 97 61.9
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 4.7e-29 131.7 104 62.5
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 6.2e-29 131.3 119 56.3
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 8.1e-29 131.0 123 52.8
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 1.1e-28 130.6 125 56.0
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.1e-28 130.6 104 61.5
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.1e-28 130.6 110 57.3
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 1.3e-26 123.6 117 50.4
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.7e-26 123.2 131 48.9
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 2.2e-26 122.9 147 47.6
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 2.9e-26 122.5 119 50.4
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 6.4e-26 121.3 120 52.5
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 3.2e-25 119.0 136 51.5
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.2e-25 119.0 109 56.0
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 7.1e-25 117.9 99 55.6
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.2e-24 117.1 110 53.6
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 6.9e-20 101.3 82 61.0
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.6e-19 97.8 66 72.7
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.1e-16 89.7 57 66.7
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.7e-16 89.4 64 60.9
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.0e-15 87.4 65 61.5
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 3.0e-15 85.9 67 58.2
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 8.7e-15 84.3 112 36.6
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.3e-14 82.4 65 56.9
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.3e-13 80.5 70 58.6
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.3e-12 75.1 55 63.6
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 6.9e-12 74.7 122 36.9
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 4.5e-11 72.0 51 64.7
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.3e-10 70.5 61 57.4
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.3e-10 70.5 61 57.4
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 8.4e-10 67.8 82 50.0
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 4.2e-09 65.5 62 58.1
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 9.3e-09 64.3 62 58.1
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.6e-08 63.5 62 56.5
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 3.5e-08 62.4 61 55.7
CARHR086300 Cardamine hirsuta HOM05D003887 ORTHO05D004523 8.7e-07 57.8 56 55.4
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 7.4e-06 54.7 47 59.6


User provided reference genes

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