Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-171 606.3 311 100.0
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-157 560.1 317 91.5
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-157 560.1 317 91.5
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.1e-157 560.1 317 91.5
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 4.6e-156 554.7 317 91.5
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.5e-154 549.7 317 90.2
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 3.6e-153 545.0 316 89.9
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 3.6e-153 545.0 316 89.9
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 8.9e-152 540.4 316 88.6
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 8.9e-152 540.4 316 88.6
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 8.9e-152 540.4 316 88.6
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.5e-151 539.7 314 89.5
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.5e-151 539.7 314 89.5
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 3.4e-151 538.5 314 89.2
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.4e-151 538.5 316 86.7
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 6.4e-150 534.3 314 88.9
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 8.4e-150 533.9 314 88.5
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 2.4e-149 532.3 319 86.2
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 3.2e-149 531.9 314 88.2
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.3e-147 525.8 320 85.0
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.1e-145 519.2 319 85.0
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 9.9e-143 510.4 319 84.0
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.0e-139 500.4 319 80.9
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 8.7e-139 497.3 320 81.2
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.1e-136 490.3 315 79.4
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 6.9e-136 487.6 319 77.7
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.5e-135 486.5 318 80.2
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 3.8e-134 481.9 320 77.8
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 4.9e-126 454.9 316 76.3
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 3.0e-123 445.7 309 73.5
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.1e-120 437.2 312 73.4
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 3.5e-87 325.9 310 57.4
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.1e-85 320.9 321 54.8
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.6e-84 317.0 322 53.4
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 6.1e-84 315.1 320 53.1
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 6.1e-84 315.1 308 57.1
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.0e-84 314.7 315 54.6
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.4e-83 313.9 322 53.1
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 1.8e-83 313.5 316 53.5
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.8e-83 313.5 316 53.8
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.0e-83 312.8 325 53.5
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 6.8e-83 311.6 322 52.8
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.0e-82 310.1 314 52.9
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.4e-82 309.3 304 56.2
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 3.4e-82 309.3 316 53.8
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 6.3e-81 305.1 322 53.7
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.8e-80 303.5 313 52.4
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 3.5e-79 299.3 315 53.3
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.5e-79 299.3 214 73.8
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 5.9e-79 298.5 314 53.8
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 6.5e-78 295.0 315 52.4
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 6.5e-78 295.0 326 50.3
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 7.2e-77 291.6 312 50.3
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.4e-77 291.2 315 52.1
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 2.1e-76 290.0 300 51.7
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.7e-76 289.7 325 50.8
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 8.0e-76 288.1 312 51.0
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 6.8e-75 285.0 305 52.1
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 4.4e-74 282.3 314 49.7
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 5.7e-74 282.0 317 49.5
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.2e-73 280.0 315 49.5
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 2.8e-73 279.6 281 52.3
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 4.9e-73 278.9 318 47.8
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.4e-72 277.3 321 49.5
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.8e-72 276.9 318 48.4
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 4.1e-72 275.8 318 49.4
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 5.4e-72 275.4 319 48.3
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 9.1e-72 274.6 288 52.8
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.2e-71 274.2 321 48.9
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.6e-71 273.9 315 49.5
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 2.7e-71 273.1 366 48.1
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 3.5e-71 272.7 335 51.0
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 4.5e-71 272.3 316 48.4
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 7.7e-71 271.6 267 54.3
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 7.7e-71 271.6 316 48.4
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.7e-70 270.4 317 47.6
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.3e-70 270.0 318 47.8
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 2.3e-70 270.0 318 48.4
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 5.0e-70 268.9 316 48.1
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 6.6e-70 268.5 312 47.8
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 8.6e-70 268.1 320 48.1
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 1.1e-69 267.7 320 47.8
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.9e-69 266.9 317 47.6
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 3.3e-69 266.2 318 47.2
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 4.2e-69 265.8 313 47.0
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 1.2e-68 264.2 315 47.9
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.6e-68 263.8 316 46.5
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 2.8e-68 263.1 317 47.9
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 3.6e-68 262.7 294 52.0
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 4.7e-68 262.3 322 47.5
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 6.1e-68 261.9 316 46.2
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 8.0e-68 261.5 321 45.8
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 8.0e-68 261.5 318 47.2
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.4e-67 260.8 316 46.8
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.8e-67 260.4 316 45.9
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.8e-67 260.4 294 51.7
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.8e-67 260.4 316 47.2
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 3.0e-67 259.6 313 45.4
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 6.8e-67 258.5 314 46.2
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 1.2e-66 257.7 301 48.5
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.2e-66 257.7 316 47.5
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.0e-66 256.9 320 47.2
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.6e-66 256.5 317 44.8
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 4.4e-66 255.8 320 46.2
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 7.5e-66 255.0 312 45.5
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 7.5e-66 255.0 302 47.0
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.7e-65 253.8 291 48.5
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.7e-65 253.8 314 45.2
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 1.7e-65 253.8 292 46.6
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 2.2e-65 253.4 284 48.9
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 6.3e-65 251.9 416 39.2
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.4e-64 250.8 270 49.3
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.8e-64 250.4 315 47.6
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 5.4e-64 248.8 317 45.4
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 7.0e-64 248.4 314 43.9
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 7.0e-64 248.4 324 46.0
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 7.8e-63 245.0 311 46.0
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.3e-62 244.2 313 46.0
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 2.8e-60 236.5 313 44.7
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 3.1e-59 233.0 317 42.3
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 3.1e-59 233.0 393 42.2
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 4.0e-59 232.6 302 44.0
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 4.0e-59 232.6 307 43.0
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 5.2e-59 232.3 316 42.4
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 6.8e-59 231.9 257 50.6
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 1.2e-58 231.1 319 42.9
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 4.4e-58 229.2 312 42.9
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 7.5e-58 228.4 257 50.2
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 3.2e-56 223.0 321 42.4
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 7.0e-56 221.9 308 42.5
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.5e-55 219.5 308 42.2
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 3.5e-55 219.5 258 45.3
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 7.8e-55 218.4 286 44.1
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.3e-54 217.6 260 48.1
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 3.6e-52 209.5 319 43.6
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.9e-51 204.9 128 83.6
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.6e-50 203.4 128 82.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 1.1e-45 188.0 339 37.5
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 7.6e-42 175.3 225 44.0
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 1.2e-39 167.9 246 39.4
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 5.8e-34 149.1 108 74.1
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 7.6e-34 148.7 321 32.1
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 3.8e-33 146.4 155 50.3
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 7.1e-32 142.1 312 32.4
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 1.0e-30 138.3 161 49.1
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 5.1e-30 136.0 307 32.6
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 3.3e-29 133.3 161 45.3
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.6e-28 129.8 325 30.2
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.9e-21 107.5 193 35.8
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.0e-19 99.8 119 47.9
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.7e-15 87.0 95 48.4
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.9e-13 80.9 85 52.9
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.9e-13 80.9 85 52.9
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.7e-12 76.6 95 47.4
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 6.9e-11 72.4 81 48.1
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 1.0e-09 68.6 78 43.6
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 1.7e-09 67.8 128 35.2
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 2.2e-09 67.4 67 49.3
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 2.2e-09 67.4 67 49.3
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.2e-07 61.6 67 44.8
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 3.5e-07 60.1 103 31.1


User provided reference genes

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