Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21010 Brassica carinata HOM05D003079 ORTHO05D003461 9.2e-221 770.0 412 100.0
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 2.0e-151 539.7 414 76.6
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 2.9e-150 535.8 414 75.8
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 3.8e-150 535.4 414 76.1
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 3.0e-147 525.8 472 69.1
A01p40240 Brassica napus HOM05D003079 ORTHO05D003461 7.4e-146 521.2 421 73.6
BraA01t04061Z Brassica rapa HOM05D003079 ORTHO05D003461 1.3e-145 520.4 421 73.6
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 5.7e-130 468.4 424 67.0
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 4.8e-129 465.3 428 66.4
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 3.1e-128 462.6 438 66.9
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 1.1e-125 454.1 418 67.7
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 2.1e-124 449.9 426 65.5
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 5.2e-123 445.3 466 62.7
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 3.4e-122 442.6 422 64.9
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 3.4e-122 442.6 422 64.9
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 1.3e-121 440.7 434 64.7
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 2.3e-110 403.3 465 58.1
Carub.0003s1274 Capsella rubella HOM05D003079 ORTHO05D003461 4.0e-107 392.5 463 57.7
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 7.3e-101 371.7 431 56.6
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 9.9e-66 255.0 470 42.3
THA.LOC104810573 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.3e-52 211.5 428 40.7
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 1.4e-32 144.8 550 31.8
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 4.2e-32 143.3 554 30.3
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 4.2e-32 143.3 555 31.5
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 5.5e-32 142.9 477 31.2
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 1.8e-30 137.9 554 29.6
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 6.7e-30 136.0 554 29.6
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 4.4e-29 133.3 465 32.0
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 9.7e-29 132.1 559 32.0
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 9.7e-29 132.1 539 28.9
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 1.3e-28 131.7 466 30.3
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 1.3e-28 131.7 552 29.2
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 1.7e-28 131.3 556 30.8
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 2.8e-28 130.6 542 30.1
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 4.8e-28 129.8 454 30.0
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 6.3e-28 129.4 573 29.7
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 8.2e-28 129.0 501 30.7
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 4.1e-27 126.7 561 29.6
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 2.0e-26 124.4 457 29.5
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 2.0e-26 124.4 472 28.8
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 7.7e-26 122.5 450 29.6
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 1.7e-25 121.3 453 30.0
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 2.9e-25 120.6 522 29.1
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 3.8e-25 120.2 564 29.4
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 6.5e-25 119.4 461 28.6
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 6.5e-25 119.4 489 28.2
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 6.5e-25 119.4 481 29.9
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 1.5e-24 118.2 537 27.7
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 4.2e-24 116.7 458 29.9
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 5.5e-24 116.3 555 29.2
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 1.6e-23 114.8 455 29.5
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 6.1e-23 112.8 554 28.3
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 1.4e-22 111.7 559 28.6
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.4e-22 111.7 545 26.8
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 1.8e-22 111.3 439 29.4
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 1.8e-22 111.3 582 26.5
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 2.3e-22 110.9 468 29.3
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 5.2e-22 109.8 464 29.3
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 5.2e-22 109.8 465 30.1
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 5.2e-22 109.8 567 28.9
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 5.7e-21 106.3 558 26.9
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 7.5e-21 105.9 523 27.7
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 9.7e-21 105.5 433 28.6
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.7e-20 104.8 433 28.6
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 2.2e-20 104.4 558 26.7
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 2.8e-20 104.0 564 26.8
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 6.3e-20 102.8 439 28.0
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.4e-19 101.7 475 28.4
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 1.8e-19 101.3 558 28.5
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 3.1e-19 100.5 568 27.8
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 5.3e-19 99.8 554 27.3
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 1.6e-18 98.2 504 27.4
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 2.0e-18 97.8 522 26.6
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 4.5e-18 96.7 578 27.0
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 1.7e-17 94.7 533 26.8
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 1.7e-17 94.7 502 27.3
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 2.2e-17 94.4 537 27.0
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.9e-17 94.0 573 25.3
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.9e-17 94.0 538 26.6
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 5.0e-17 93.2 541 27.2
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 8.5e-17 92.4 567 27.0
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 8.5e-17 92.4 563 26.5
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.1e-16 92.0 552 25.9
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 1.1e-16 92.0 423 28.4
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 1.5e-16 91.7 571 26.6
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.5e-16 91.7 608 26.0
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.9e-16 91.3 552 25.9
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.9e-16 91.3 552 25.9
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 2.5e-16 90.9 540 26.3
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 2.5e-16 90.9 541 26.2
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 4.2e-16 90.1 563 25.4
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 5.5e-16 89.7 537 26.1
C03p63130 Brassica napus HOM05D003079 ORTHO05D003461 1.2e-15 88.6 59 81.4
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 2.1e-15 87.8 509 25.9
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.1e-15 87.8 543 26.3
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 2.1e-15 87.8 531 26.9
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 3.6e-15 87.0 561 25.7
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 4.7e-15 86.7 549 26.4
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 4.7e-15 86.7 529 26.7
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 8.0e-15 85.9 553 26.8
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 1.0e-14 85.5 561 26.7
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 1.4e-14 85.1 485 26.8
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 1.4e-14 85.1 536 26.3
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.4e-14 85.1 425 26.8
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.8e-14 84.7 566 27.4
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 6.8e-14 82.8 537 26.1
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 6.8e-14 82.8 573 24.6
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 8.8e-14 82.4 544 25.9
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 8.8e-14 82.4 383 27.4
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 1.2e-13 82.0 518 26.4
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 1.2e-13 82.0 557 26.9
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 2.0e-13 81.3 569 24.6
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 2.0e-13 81.3 378 28.8
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 2.6e-13 80.9 541 26.2
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 3.4e-13 80.5 546 26.0
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 3.4e-13 80.5 550 25.6
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 3.4e-13 80.5 538 26.2
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 7.5e-13 79.3 479 26.9
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 7.5e-13 79.3 515 24.9
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 7.5e-13 79.3 579 25.4
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 9.8e-13 79.0 559 25.8
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 9.8e-13 79.0 547 27.1
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 2.8e-12 77.4 422 27.7
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 2.8e-12 77.4 513 25.7
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 2.8e-12 77.4 415 28.7
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 8.3e-12 75.9 580 23.6
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.1e-11 75.5 573 24.6
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 1.4e-11 75.1 548 24.8
BcaC01g05490 Brassica carinata HOM05D041398 ORTHO05D032673 4.1e-11 73.6 63 65.1
C03p25880 Brassica napus HOM05D041398 ORTHO05D032673 4.1e-11 73.6 63 65.1
BolC3t14974H Brassica oleracea HOM05D041398 ORTHO05D032673 4.1e-11 73.6 63 65.1
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 5.4e-11 73.2 561 26.6
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 2.7e-10 70.9 245 32.2
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 7.7e-10 69.3 480 23.8
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 1.7e-09 68.2 531 25.8
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 6.5e-09 66.2 503 23.7
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 8.5e-09 65.9 399 24.8
CDE02G1968 Ceratophyllum demersum HOM05D000308 ORTHO05D003461 1.1e-08 65.5 416 26.7
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 1.9e-08 64.7 364 26.1
BcaC04g20138 Brassica carinata HOM05D003079 ORTHO05D003461 5.5e-08 63.2 168 31.5
BolC9t57600H Brassica oleracea HOM05D003079 ORTHO05D003461 5.5e-08 63.2 168 31.5
Lsat_1_v5_gn_7_115521 Lactuca sativa HOM05D003079 ORTHO05D003461 5.5e-08 63.2 374 27.0
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 1.2e-07 62.0 304 29.6
BcaB08g35981 Brassica carinata HOM05D003079 ORTHO05D003461 2.1e-07 61.2 211 31.3
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 2.1e-07 61.2 482 26.6
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 3.6e-07 60.5 473 25.6
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 3.6e-07 60.5 487 23.0
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 4.7e-07 60.1 257 26.1
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 6.1e-07 59.7 395 27.1
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 6.1e-07 59.7 280 28.6
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 8.0e-07 59.3 271 27.3
C09p47450 Brassica napus HOM05D003079 ORTHO05D003461 1.4e-06 58.5 169 30.8
Ah.06g180930 Amaranthus hybridus HOM05D003079 ORTHO05D003461 4.0e-06 57.0 467 24.2
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 6.8e-06 56.2 493 24.1
A10p13440 Brassica napus HOM05D003079 ORTHO05D003461 6.8e-06 56.2 198 29.8
BraA10t43447Z Brassica rapa HOM05D003079 ORTHO05D003461 6.8e-06 56.2 198 29.8
ECA236G4881 Erigeron canadensis HOM05D003079 ORTHO05D003461 8.8e-06 55.8 393 25.7


User provided reference genes

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