Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21007 Brassica carinata HOM05D006765 ORTHO05D008554 1.8e-215 752.3 378 100.0
BraA01t04065Z Brassica rapa HOM05D006765 ORTHO05D008554 2.2e-184 649.0 377 88.1
A01p40290 Brassica napus HOM05D006765 ORTHO05D008554 3.1e-183 645.2 377 87.5
C01p51810 Brassica napus HOM05D006765 ORTHO05D008554 5.5e-180 634.4 376 86.4
BcaC09g48297 Brassica carinata HOM05D006765 ORTHO05D008554 1.3e-176 623.2 375 85.3
BolC1t05128H Brassica oleracea HOM05D006765 ORTHO05D008554 2.5e-172 609.0 375 84.0
Thhalv10020892m.g Eutrema salsugineum HOM05D006765 ORTHO05D008554 1.0e-154 550.4 390 75.9
AL3G25050 Arabidopsis lyrata HOM05D006765 ORTHO05D008554 1.1e-140 503.8 387 69.5
AT3G13226 Arabidopsis thaliana HOM05D006765 ORTHO05D008554 1.6e-131 473.4 387 66.9
Sp3g11440 Schrenkiella parvula HOM05D006765 ORTHO05D008554 2.8e-123 446.0 387 65.9
CARHR087860 Cardamine hirsuta HOM05D006765 ORTHO05D008554 1.5e-116 423.7 388 64.4
Carub.0003s1262 Capsella rubella HOM05D006765 ORTHO05D008554 5.3e-114 415.2 387 61.5
Aa31LG8G470 Aethionema arabicum HOM05D006765 ORTHO05D008554 3.3e-108 396.0 385 59.7
THA.LOC104801913 Tarenaya hassleriana HOM05D006765 ORTHO05D008554 2.5e-79 300.1 386 46.9
Manes.01G004100 Manihot esculenta HOM05D006765 ORTHO05D008554 2.0e-60 237.3 371 41.2
TAR629G2312 Trochodendron aralioides HOM05D006765 ORTHO05D008554 4.4e-60 236.1 382 41.6
QL08p002606 Quercus lobata HOM05D006765 ORTHO05D008554 3.1e-58 229.9 375 39.5
Cpa.g.sc12.101 Carica papaya HOM05D006765 ORTHO05D008554 4.1e-58 229.6 377 36.3
Lj1A895T73 Lonicera japonica HOM05D006765 ORTHO05D008554 4.1e-58 229.6 367 40.6
Actinidia03654 Actinidia chinensis HOM05D006765 ORTHO05D008554 2.7e-57 226.9 371 40.2
Dinv40889 Davidia involucrata HOM05D006765 ORTHO05D008554 1.1e-55 221.5 377 40.1
Gorai.009G452100 Gossypium raimondii HOM05D006765 ORTHO05D008554 1.1e-55 221.5 373 37.5
CANSAT11G0072 Cannabis sativa HOM05D006765 ORTHO05D008554 1.5e-55 221.1 368 37.5
COL.COLO4_07747 Corchorus olitorius HOM05D006765 ORTHO05D008554 1.9e-55 220.7 371 38.8
RcHm_v2.0_Chr5g0075451 Rosa chinensis HOM05D006765 ORTHO05D008554 2.5e-55 220.3 378 38.9
Gohir.A04G004500 Gossypium hirsutum HOM05D006765 ORTHO05D008554 5.5e-55 219.2 371 37.7
GSVIVG01014751001 Vitis vinifera HOM05D006765 ORTHO05D008554 7.2e-55 218.8 200 56.0
Cfa021898 Carpinus fangiana HOM05D006765 ORTHO05D008554 9.5e-55 218.4 367 38.7
Gohir.D05G385400 Gossypium hirsutum HOM05D006765 ORTHO05D008554 9.5e-55 218.4 373 37.5
FAN11G3685 Fragaria x ananassa HOM05D006765 ORTHO05D008554 1.2e-54 218.0 381 37.5
TWI38G1422 Tripterygium wilfordii HOM05D006765 ORTHO05D008554 1.6e-54 217.6 370 38.6
Duzib213G0912 Durio zibethinus HOM05D006765 ORTHO05D008554 3.6e-54 216.5 376 38.3
FvH4_3g42180 Fragaria vesca HOM05D006765 ORTHO05D008554 4.7e-54 216.1 381 37.3
Nn1g07719 Nelumbo nucifera HOM05D006765 ORTHO05D008554 6.1e-54 215.7 360 43.3
Prupe.6G029100 Prunus persica HOM05D006765 ORTHO05D008554 6.1e-54 215.7 368 38.9
SGA_v2.0_scaffold168G38579 Striga asiatica HOM05D006765 ORTHO05D008554 8.0e-54 215.3 374 37.7
Sopen07g034060 Solanum pennellii HOM05D006765 ORTHO05D008554 1.4e-53 214.5 207 54.1
Sabra16G0317200 Salix brachista HOM05D006765 ORTHO05D008554 6.8e-53 212.2 386 36.8
CSS0016155 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 8.8e-53 211.8 385 37.9
DCAR_013261 Daucus carota HOM05D006765 ORTHO05D008554 8.8e-53 211.8 171 62.0
Solyc07g065870.3 Solanum lycopersicum HOM05D006765 ORTHO05D008554 2.0e-52 210.7 204 53.4
CiPaw.11G207500 Carya illinoinensis HOM05D006765 ORTHO05D008554 2.6e-52 210.3 212 51.4
Potri.001G467400 Populus trichocarpa HOM05D006765 ORTHO05D008554 3.4e-52 209.9 386 37.3
CSS0046328 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 4.4e-52 209.5 384 37.5
Ciclev10008671m.g Citrus clementina HOM05D006765 ORTHO05D008554 7.5e-52 208.8 380 35.8
CAN.G623.40 Capsicum annuum HOM05D006765 ORTHO05D008554 1.3e-51 208.0 199 52.8
Rhsim04G0010100 Rhododendron simsii HOM05D006765 ORTHO05D008554 1.3e-51 208.0 230 47.8
PGSC0003DMG400022157 Solanum tuberosum HOM05D006765 ORTHO05D008554 1.7e-51 207.6 209 51.7
Hma1.2p1_1094F.1_g256340 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 3.7e-51 206.5 172 59.9
Lsat_1_v5_gn_7_114860 Lactuca sativa HOM05D006765 ORTHO05D008554 1.1e-50 204.9 341 38.1
Nitab4.5_0003130g0010 Nicotiana tabacum HOM05D006765 ORTHO05D008554 2.4e-50 203.8 184 53.3
Peaxi162Scf00232g00025 Petunia axillaris HOM05D006765 ORTHO05D008554 2.4e-50 203.8 212 50.9
Eucgr.F02021 Eucalyptus grandis HOM05D006765 ORTHO05D008554 3.1e-50 203.4 210 48.6
PGR083G0751 Punica granatum HOM05D006765 ORTHO05D008554 1.2e-49 201.4 375 35.2
Migut.M01623 Erythranthe guttata HOM05D006765 ORTHO05D008554 1.6e-49 201.1 181 55.2
FAN25G2031 Fragaria x ananassa HOM05D006765 ORTHO05D008554 2.7e-49 200.3 354 37.3
CsaV3_7G021520 Cucumis sativus L. HOM05D006765 ORTHO05D008554 4.5e-49 199.5 380 36.3
Oeu005464.1 Olea europaea HOM05D006765 ORTHO05D008554 5.9e-49 199.1 174 55.7
ClCG09G021580 Citrullus lanatus HOM05D006765 ORTHO05D008554 1.0e-48 198.4 395 35.7
Nitab4.5_0000152g0290 Nicotiana tabacum HOM05D006765 ORTHO05D008554 1.3e-48 198.0 218 46.8
Cc05_g15360 Coffea canephora HOM05D006765 ORTHO05D008554 1.7e-48 197.6 209 46.9
FAN16G0764 Fragaria x ananassa HOM05D006765 ORTHO05D008554 1.7e-48 197.6 216 48.6
HanXRQChr15g0488021 Helianthus annuus HOM05D006765 ORTHO05D008554 1.7e-48 197.6 165 58.2
Glyma.02G302700 Glycine max HOM05D006765 ORTHO05D008554 2.3e-48 197.2 174 54.6
AUR62017157 Chenopodium quinoa HOM05D006765 ORTHO05D008554 8.6e-48 195.3 381 36.2
Sed0017860 Sechium edule HOM05D006765 ORTHO05D008554 8.6e-48 195.3 219 47.5
LjContig00081g0022778 Lotus japonicus HOM05D006765 ORTHO05D008554 1.9e-47 194.1 174 53.4
Phvul.008G281600 Phaseolus vulgaris HOM05D006765 ORTHO05D008554 1.9e-47 194.1 174 52.3
Sc03g0011660 Simmondsia chinensis HOM05D006765 ORTHO05D008554 3.3e-47 193.4 203 49.3
MBI15_g19869_MAGBIO Magnolia biondii HOM05D006765 ORTHO05D008554 4.3e-47 193.0 212 46.7
arahy.Tifrunner.gnm1.ann1.C7HE0M Arachis hypogaea HOM05D006765 ORTHO05D008554 5.6e-47 192.6 204 47.1
TPR.G1253 Trifolium pratense HOM05D006765 ORTHO05D008554 7.3e-47 192.2 227 44.9
Glyma.14G011300 Glycine max HOM05D006765 ORTHO05D008554 9.5e-47 191.8 174 53.4
Hund01854 Selenicereus undatus HOM05D006765 ORTHO05D008554 9.5e-47 191.8 173 54.9
Ca_06420_v3 Cicer arietinum L. HOM05D006765 ORTHO05D008554 1.2e-46 191.4 234 44.0
ECA236G1773 Erigeron canadensis HOM05D006765 ORTHO05D008554 1.6e-46 191.0 209 50.7
FAN21G2411 Fragaria x ananassa HOM05D006765 ORTHO05D008554 6.1e-46 189.1 359 35.7
EL10Ac4g07518 Beta vulgaris HOM05D006765 ORTHO05D008554 1.0e-45 188.3 378 36.2
MELO3C013197.2 Cucumis melo HOM05D006765 ORTHO05D008554 1.0e-45 188.3 382 33.5
Medtr5g096560 Medicago truncatula HOM05D006765 ORTHO05D008554 3.0e-45 186.8 234 41.9
Psat2g006160 Pisum sativum HOM05D006765 ORTHO05D008554 6.8e-45 185.7 205 44.9
PSO675G8178 Papaver somniferum HOM05D006765 ORTHO05D008554 1.2e-44 184.9 172 50.6
Lalb_Chr04g0247731 Lupinus albus HOM05D006765 ORTHO05D008554 5.7e-44 182.6 209 45.0
ATR0751G181 Amborella trichopoda HOM05D006765 ORTHO05D008554 9.8e-44 181.8 205 45.9
AUR62035647 Chenopodium quinoa HOM05D006765 ORTHO05D008554 9.8e-44 181.8 170 51.2
PSO541G0333 Papaver somniferum HOM05D006765 ORTHO05D008554 9.8e-44 181.8 392 33.4
Os04g0667900 Oryza sativa ssp. japonica HOM05D006765 ORTHO05D008554 1.3e-43 181.4 172 49.4
Aqoxy2G01345 Aquilegia oxysepala HOM05D006765 ORTHO05D008554 3.7e-43 179.9 224 47.3
Haze_09874 Corylus avellana HOM05D006765 ORTHO05D008554 4.9e-43 179.5 392 33.2
SalBow8G5524 Salvia bowleyana HOM05D006765 ORTHO05D008554 8.3e-43 178.7 366 34.4
Zm00001eb433160 Zea mays HOM05D006765 ORTHO05D008554 2.4e-42 177.2 172 49.4
Ah.08g214160 Amaranthus hybridus HOM05D006765 ORTHO05D008554 5.4e-42 176.0 380 33.9
arahy.Tifrunner.gnm1.ann1.8KGR77 Arachis hypogaea HOM05D006765 ORTHO05D008554 5.4e-42 176.0 242 40.1
Prupe.6G082900 Prunus persica HOM05D006765 ORTHO05D008554 9.2e-42 175.3 173 52.0
MD03G1037000 Malus domestica HOM05D006765 ORTHO05D008554 6.6e-40 169.1 118 65.3
VMungo0647G1474 Vigna mungo HOM05D006765 ORTHO05D008554 3.1e-37 160.2 283 35.3
vmacro09619 Vaccinium macrocarpon HOM05D006765 ORTHO05D008554 3.4e-36 156.8 252 40.5
Prupe.6G029900 Prunus persica HOM05D006765 ORTHO05D008554 8.6e-32 142.1 163 47.2
Pp3c19_18350 Physcomitrium patens HOM05D006765 ORTHO05D008554 1.1e-31 141.7 173 41.6
CDE04G0216 Ceratophyllum demersum HOM05D006765 ORTHO05D008554 7.5e-28 129.0 118 49.2
Sed0007098 Sechium edule HOM05D006765 ORTHO05D008554 4.6e-25 119.8 296 32.8
SMO115G0196 Selaginella moellendorffii HOM05D006765 ORTHO05D008554 4.6e-25 119.8 213 31.0
SEGI_27535 Sequoiadendron giganteum HOM05D006765 ORTHO05D008554 1.3e-24 118.2 122 45.1
Thecc.07G007200 Theobroma cacao HOM05D006765 ORTHO05D008554 1.7e-24 117.9 281 33.5
Mapoly0047s0103 Marchantia polymorpha HOM05D006765 ORTHO05D008554 2.3e-24 117.5 187 33.2
Psat2g006040 Pisum sativum HOM05D006765 ORTHO05D008554 7.8e-17 92.4 88 46.6
MCO16G170 Micromonas commoda HOM05D006765 ORTHO05D008554 7.3e-15 85.9 193 26.4
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 4.4e-12 76.6 117 36.8
Hma1.2p1_1094F.1_g256330 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 1.6e-06 58.2 251 27.9


User provided reference genes

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