Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 0.0e+00 1610.1 881 100.0
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 0.0e+00 1273.8 886 82.1
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 0.0e+00 1267.7 893 81.5
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 0.0e+00 1265.0 916 79.7
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 0.0e+00 1224.2 899 77.4
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 0.0e+00 1196.8 836 81.8
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 0.0e+00 1178.7 841 80.5
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 0.0e+00 1075.1 907 69.8
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 1.2e-294 1016.5 907 67.1
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 7.6e-273 944.1 784 70.3
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 9.0e-266 920.6 785 68.7
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 7.6e-265 917.5 786 69.0
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 7.7e-241 837.8 956 57.2
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 4.0e-197 692.6 934 51.1
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 1.7e-123 448.0 992 38.5
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 5.0e-115 419.9 980 38.2
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 1.2e-113 415.2 1011 38.5
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 6.1e-113 412.9 974 38.4
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.4e-112 411.8 977 38.4
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 1.8e-112 411.4 1015 38.4
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 6.7e-112 409.5 981 36.9
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 9.7e-111 405.6 1002 37.6
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 1.3e-110 405.2 961 38.8
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 6.3e-110 402.9 968 37.2
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 7.0e-109 399.4 1036 35.9
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 4.5e-108 396.7 976 37.8
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 2.3e-104 384.4 987 37.5
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 3.0e-104 384.0 961 36.6
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 3.7e-102 377.1 947 37.0
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.4e-101 374.4 955 37.3
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 3.1e-101 374.0 958 38.1
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 4.1e-101 373.6 973 34.4
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 5.4e-101 373.2 1003 35.3
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 9.1e-101 372.5 965 35.2
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 2.0e-100 371.3 957 37.8
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 2.0e-100 371.3 971 37.1
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.7e-100 370.9 962 36.5
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.5e-100 370.5 1003 35.3
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.7e-99 368.2 962 36.7
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 2.9e-99 367.5 963 35.9
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 3.8e-99 367.1 979 35.1
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 2.5e-98 364.4 994 35.4
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 1.0e-96 359.0 998 35.1
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 2.0e-95 354.8 978 35.5
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 5.7e-95 353.2 932 35.9
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 2.2e-94 351.3 947 36.1
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 2.2e-94 351.3 967 36.9
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 2.8e-94 350.9 982 35.1
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 3.7e-94 350.5 908 35.8
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 1.1e-93 349.0 977 34.7
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 1.8e-93 348.2 956 34.8
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 7.0e-93 346.3 971 34.7
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 9.2e-93 345.9 956 35.4
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 9.2e-93 345.9 983 35.7
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 5.9e-92 343.2 945 34.5
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 2.9e-91 340.9 858 37.2
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 5.0e-91 340.1 967 34.4
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 5.0e-91 340.1 994 33.6
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 1.9e-90 338.2 909 35.2
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 5.6e-90 336.7 981 35.2
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 1.6e-89 335.1 941 36.0
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 2.1e-89 334.7 1029 34.2
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 6.1e-89 333.2 964 35.2
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 4.0e-88 330.5 1003 33.6
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 3.4e-87 327.4 977 34.1
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 2.2e-86 324.7 929 35.1
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 4.9e-86 323.6 914 35.4
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 2.4e-85 321.2 988 35.3
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 9.2e-85 319.3 944 35.4
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 2.0e-84 318.2 1079 31.6
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 3.0e-83 314.3 988 34.9
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 5.6e-82 310.1 987 32.2
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.0e-80 305.8 800 35.8
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 1.4e-80 305.4 855 34.0
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 1.4e-80 305.4 963 32.4
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 1.4e-77 295.4 821 33.0
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 9.2e-77 292.7 808 34.8
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 1.6e-76 292.0 893 34.4
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 7.8e-76 289.7 997 32.0
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 3.0e-75 287.7 1009 32.3
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.1e-74 285.8 894 33.0
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 4.3e-74 283.9 955 33.4
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 9.5e-74 282.7 838 32.9
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 9.5e-74 282.7 987 31.1
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 6.2e-73 280.0 921 33.3
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 1.8e-72 278.5 994 30.8
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 2.3e-72 278.1 901 32.4
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 3.1e-72 277.7 1015 31.9
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 9.8e-71 272.7 827 34.0
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 1.3e-70 272.3 805 35.2
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 2.9e-70 271.2 921 34.0
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 8.3e-70 269.6 1034 31.5
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 4.1e-69 267.3 932 31.7
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 1.2e-68 265.8 827 31.9
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 3.5e-68 264.2 1033 30.9
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 3.3e-66 257.7 969 32.9
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 1.1e-64 252.7 874 31.6
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 2.3e-64 251.5 909 32.6
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 6.8e-64 250.0 884 32.9
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.2e-60 239.2 951 29.3
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 1.6e-60 238.8 980 31.6
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 1.0e-59 236.1 1009 30.0
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 1.9e-58 231.9 741 34.7
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 2.4e-56 224.9 1110 29.3
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 2.1e-52 211.8 939 30.0
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 6.0e-52 210.3 1088 28.5
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 4.9e-46 190.7 917 30.9
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 9.3e-45 186.4 651 33.3
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 6.9e-40 170.2 942 26.2
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 3.2e-37 161.4 156 57.1
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 6.2e-33 147.1 429 31.5
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 1.8e-32 145.6 158 54.4
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 5.8e-31 140.6 421 31.1
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 2.3e-27 128.6 158 47.5
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 2.0e-23 115.5 239 36.8
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 2.2e-22 112.1 998 24.8
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 3.2e-21 108.2 1072 23.4
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 2.3e-19 102.1 215 35.8
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 6.7e-19 100.5 102 59.8
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 2.5e-18 98.6 160 41.2
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 2.2e-17 95.5 483 27.5
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 7.7e-15 87.0 159 37.7
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 3.9e-11 74.7 142 39.4
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 5.1e-11 74.3 130 41.5
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 3.3e-10 71.6 73 47.9
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.2e-09 68.9 308 32.1
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 3.7e-09 68.2 98 42.9
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 4.8e-09 67.8 60 66.7
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 8.2e-09 67.0 187 29.9
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 9.1e-08 63.5 60 63.3
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 7.7e-07 60.5 406 28.1
HPP92_028499 Vanilla planifolia HOM05D005351 ORTHO05D006542 8.5e-06 57.0 91 47.3


User provided reference genes

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