Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20986 Brassica carinata HOM05D004778 ORTHO05D005679 1.5e-21 105.5 63 100.0
C01p51570 Brassica napus HOM05D004778 ORTHO05D005679 1.5e-21 105.5 63 100.0
BolC1t05100H Brassica oleracea HOM05D004778 ORTHO05D005679 1.5e-21 105.5 63 100.0
BraA01t04050Z Brassica rapa HOM05D004778 ORTHO05D005679 9.6e-21 102.8 63 96.8
BcaB05g23546 Brassica carinata HOM05D004778 ORTHO05D005679 2.6e-18 94.7 63 92.1
BcaNung06233 Brassica carinata HOM05D004778 ORTHO05D005679 1.7e-17 92.0 63 90.5
BolC5t34103H Brassica oleracea HOM05D004778 ORTHO05D005679 1.7e-17 92.0 63 90.5
CARHR088190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 1.7e-17 92.0 63 90.5
BraA05t22399Z Brassica rapa HOM05D004778 ORTHO05D005679 5.0e-17 90.5 63 88.9
Carub.0003s1299 Capsella rubella HOM05D004778 ORTHO05D005679 1.9e-16 88.6 63 88.9
AT3G13520 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 5.5e-16 87.0 63 90.5
AL3G25430 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 1.0e-14 82.8 63 87.3
Aa31LG8G720 Aethionema arabicum HOM05D004778 ORTHO05D005679 1.1e-11 72.8 64 79.7
C05p54350 Brassica napus HOM05D004778 ORTHO05D005679 4.1e-11 70.9 48 89.6
A08p00710 Brassica napus HOM05D004778 ORTHO05D005679 5.3e-11 70.5 60 75.0
BraA08t32128Z Brassica rapa HOM05D004778 ORTHO05D005679 5.3e-11 70.5 60 75.0
Sp1g41010 Schrenkiella parvula HOM05D004778 ORTHO05D005679 5.3e-11 70.5 63 76.2
BcaB04g16964 Brassica carinata HOM05D004778 ORTHO05D005679 6.9e-11 70.1 60 75.0
BcaC01g01515 Brassica carinata HOM05D004778 ORTHO05D005679 6.9e-11 70.1 60 75.0
BcaC08g43615 Brassica carinata HOM05D004778 ORTHO05D005679 6.9e-11 70.1 63 74.6
C03p92630 Brassica napus HOM05D004778 ORTHO05D005679 6.9e-11 70.1 60 75.0
C06p10290 Brassica napus HOM05D004778 ORTHO05D005679 6.9e-11 70.1 63 74.6
BolC3t21577H Brassica oleracea HOM05D004778 ORTHO05D005679 6.9e-11 70.1 60 75.0
BolC6t36104H Brassica oleracea HOM05D004778 ORTHO05D005679 9.1e-11 69.7 63 73.0
A05p35930 Brassica napus HOM05D004778 ORTHO05D005679 1.2e-10 69.3 48 87.5
A05p17520 Brassica napus HOM05D004778 ORTHO05D005679 2.0e-10 68.6 63 73.0
A06p00250 Brassica napus HOM05D004778 ORTHO05D005679 2.0e-10 68.6 57 75.4
BraA05t20646Z Brassica rapa HOM05D004778 ORTHO05D005679 2.0e-10 68.6 63 73.0
BraA06t23241Z Brassica rapa HOM05D004778 ORTHO05D005679 2.0e-10 68.6 57 75.4
BcaC08g44193 Brassica carinata HOM05D004778 ORTHO05D005679 1.0e-09 66.2 63 71.4
BolC6t36791H Brassica oleracea HOM05D004778 ORTHO05D005679 1.0e-09 66.2 63 71.4
Sp3g11730 Schrenkiella parvula HOM05D004778 ORTHO05D005679 3.8e-09 64.3 63 76.2
Cpa.g.sc119.43 Carica papaya HOM05D004778 ORTHO05D005679 8.5e-09 63.2 63 66.7
Aa31LG3G12430 Aethionema arabicum HOM05D004778 ORTHO05D005679 2.1e-07 58.5 63 60.3
CARHR270190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 2.7e-07 58.2 63 61.9
Thhalv10027232m.g Eutrema salsugineum HOM05D004778 ORTHO05D005679 2.7e-07 58.2 63 61.9
AL7G26630 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 3.6e-07 57.8 63 63.5
AT4G26320 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 3.6e-07 57.8 63 63.5
AT5G56540 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 4.6e-07 57.4 63 58.7
AL8G32300 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 6.1e-07 57.0 63 58.7
CARHR233890 Cardamine hirsuta HOM05D004778 ORTHO05D005679 1.0e-06 56.2 63 63.5
Sp6g18330 Schrenkiella parvula HOM05D004778 ORTHO05D005679 1.0e-06 56.2 63 60.3
Cfa001534 Carpinus fangiana HOM05D004778 ORTHO05D005679 1.8e-06 55.5 63 58.7
Lj1g0005970 Lotus japonicus HOM05D004778 ORTHO05D005679 1.8e-06 55.5 63 57.1
A02p09020 Brassica napus HOM05D004778 ORTHO05D005679 3.0e-06 54.7 63 57.1
BraA02t05971Z Brassica rapa HOM05D004778 ORTHO05D005679 3.0e-06 54.7 63 57.1
Carub.0007s1462 Capsella rubella HOM05D004778 ORTHO05D005679 3.0e-06 54.7 63 58.7
BcaC03g14215 Brassica carinata HOM05D004778 ORTHO05D005679 5.1e-06 53.9 63 55.6
C02p15150 Brassica napus HOM05D004778 ORTHO05D005679 5.1e-06 53.9 63 55.6
BolC2t07632H Brassica oleracea HOM05D004778 ORTHO05D005679 5.1e-06 53.9 63 55.6
Hma1.2p1_0152F.1_g067660 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 8.8e-06 53.1 63 55.6
Manes.09G140700 Manihot esculenta HOM05D004778 ORTHO05D005679 8.8e-06 53.1 63 57.1
TAR623G1546 Trochodendron aralioides HOM05D004778 ORTHO05D005679 8.8e-06 53.1 63 57.1


User provided reference genes

Program Settings