Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 1.4e-179 632.9 335 100.0
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 3.0e-161 572.0 335 89.3
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 3.0e-161 572.0 337 89.0
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 6.7e-161 570.9 337 89.0
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 6.7e-161 570.9 337 89.0
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 5.8e-157 557.8 330 88.5
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 2.9e-140 502.3 339 81.1
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 2.5e-131 472.6 342 76.6
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 2.1e-130 469.5 343 77.3
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 1.3e-124 450.3 342 74.3
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 2.7e-122 442.6 341 75.7
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 4.4e-120 435.3 337 74.2
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 1.3e-116 423.7 341 74.5
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 2.7e-114 416.0 336 72.0
Sp3g13320 Schrenkiella parvula HOM05D008621 ORTHO05D010242 4.4e-112 408.7 304 73.4
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 1.3e-92 344.0 234 82.5
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 8.6e-84 314.7 341 60.7
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 9.8e-80 301.2 238 75.2
THA.LOC104810457 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 1.7e-52 210.7 344 46.2
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 5.4e-46 189.1 407 40.5
AL1G61580 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 1.5e-43 181.0 396 39.6
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 1.3e-42 177.9 391 40.7
Carub.0001s4237 Capsella rubella HOM05D008621 ORTHO05D010242 3.1e-41 173.3 393 40.5
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 2.6e-40 170.2 388 39.4
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 5.8e-40 169.1 385 38.7
THA.LOC104798755 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 4.9e-39 166.0 335 40.6
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 1.4e-38 164.5 389 38.8
BraA05t20746Z Brassica rapa HOM05D008621 ORTHO05D010242 3.2e-38 163.3 392 38.8
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 5.5e-38 162.5 390 39.5
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 5.5e-38 162.5 390 39.5
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 7.1e-38 162.2 388 38.7
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 2.7e-37 160.2 387 38.8
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 6.7e-36 155.6 389 38.0
A05p18520 Brassica napus HOM05D008621 ORTHO05D010242 8.7e-36 155.2 390 37.4
C06p14570 Brassica napus HOM05D008621 ORTHO05D010242 8.7e-36 155.2 390 38.5
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 1.9e-35 154.1 389 37.8
CARHR043410 Cardamine hirsuta HOM05D008621 ORTHO05D010242 1.4e-30 137.9 282 43.3
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 1.8e-28 131.0 349 34.7
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 3.1e-25 120.2 331 36.3
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 5.3e-25 119.4 356 33.1
Aa31LG10G1950 Aethionema arabicum HOM05D008621 ORTHO05D010242 1.9e-22 110.9 438 30.4
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 2.3e-20 104.0 347 31.4
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 5.1e-20 102.8 338 31.4
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 6.7e-20 102.4 345 31.3
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 8.8e-20 102.1 347 32.0
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 9.7e-19 98.6 347 31.1
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 3.7e-18 96.7 349 33.5
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 6.3e-18 95.9 347 31.4
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 1.1e-17 95.1 366 28.7
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 1.4e-17 94.7 341 32.0
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 3.1e-17 93.6 352 32.7
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 7.7e-16 89.0 362 29.3
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 1.3e-15 88.2 346 31.2
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 2.2e-15 87.4 338 30.2
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 3.8e-15 86.7 373 31.4
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 5.0e-15 86.3 338 29.0
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 6.5e-15 85.9 356 27.8
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 5.5e-14 82.8 354 31.6
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 9.4e-14 82.0 353 30.0
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 1.2e-13 81.6 359 29.2
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 2.7e-13 80.5 340 27.6
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 6.1e-13 79.3 364 29.1
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 3.9e-12 76.6 340 31.5
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 5.1e-12 76.3 357 30.5
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 8.8e-12 75.5 360 28.6
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 4.4e-11 73.2 341 30.2
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 4.4e-11 73.2 377 26.3
HanXRQChr10g0302501 Helianthus annuus HOM05D016023 ORTHO05D010242 1.3e-10 71.6 328 27.7
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 1.3e-10 71.6 341 30.8
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 1.7e-10 71.2 351 28.8
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 2.2e-10 70.9 342 28.7
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 6.3e-10 69.3 351 28.2
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 8.2e-10 68.9 360 29.4
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 1.1e-09 68.6 328 29.3
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 1.1e-09 68.6 344 27.3
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 1.4e-09 68.2 346 28.6
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 1.4e-09 68.2 379 28.0
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 2.4e-09 67.4 340 30.9
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 2.4e-09 67.4 206 33.0
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 2.4e-09 67.4 330 30.3
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 4.1e-09 66.6 143 39.2
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 9.1e-09 65.5 318 30.5
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 3.4e-08 63.5 345 28.1
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 3.4e-08 63.5 343 29.7
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 4.5e-08 63.2 320 29.1
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 5.9e-08 62.8 229 29.7
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 1.3e-07 61.6 202 34.2
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.7e-07 61.2 341 29.3
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 2.2e-07 60.8 339 26.3
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 2.9e-07 60.5 204 32.4
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 5.0e-07 59.7 356 28.4
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 5.0e-07 59.7 351 27.1
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 2.5e-06 57.4 347 28.8
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 2.5e-06 57.4 137 36.5
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 4.2e-06 56.6 181 33.7
CsaV3_3G019560 Cucumis sativus L. HOM05D001501 ORTHO05D001329 5.5e-06 56.2 267 28.8


User provided reference genes

Program Settings