Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 2.0e-96 355.9 196 100.0
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 4.7e-82 308.1 203 88.7
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 4.7e-82 308.1 203 88.7
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 1.4e-81 306.6 205 88.3
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 5.2e-81 304.7 209 85.6
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 2.0e-80 302.8 205 88.3
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 3.2e-78 295.4 208 84.6
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 3.2e-78 295.4 208 83.2
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 4.1e-78 295.0 207 84.5
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 1.2e-77 293.5 208 84.1
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 2.0e-77 292.7 204 84.8
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 2.1e-74 282.7 203 82.8
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 3.6e-74 282.0 203 83.7
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 1.1e-73 280.4 212 80.2
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 1.4e-73 280.0 205 81.5
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 4.0e-73 278.5 205 81.5
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 4.9e-71 271.6 204 80.9
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 8.9e-65 250.8 200 74.5
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 5.8e-64 248.1 192 75.5
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 2.6e-56 222.6 146 88.4
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 1.7e-55 219.9 139 91.4
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 3.8e-55 218.8 139 90.6
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 1.2e-53 213.8 148 87.2
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 4.7e-50 201.8 188 64.9
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 1.2e-48 197.2 182 64.3
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.0e-48 196.4 183 64.5
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 3.4e-48 195.7 182 64.3
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 9.9e-48 194.1 187 63.1
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 9.9e-48 194.1 177 64.4
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 1.3e-47 193.7 186 65.1
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 2.9e-47 192.6 182 65.4
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 2.9e-47 192.6 182 65.4
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 3.8e-47 192.2 197 60.9
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 6.4e-47 191.4 184 63.6
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.9e-46 189.9 188 63.3
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 1.9e-46 189.9 173 67.1
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 1.9e-46 189.9 182 64.8
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 9.3e-46 187.6 185 63.8
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 1.2e-45 187.2 176 64.8
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 1.6e-45 186.8 198 60.1
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 1.6e-45 186.8 182 60.4
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 1.6e-45 186.8 176 63.6
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 2.1e-45 186.4 178 61.8
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 3.5e-45 185.7 186 62.4
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 3.5e-45 185.7 178 61.8
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 6.0e-45 184.9 183 61.7
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 7.8e-45 184.5 177 62.1
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 1.3e-44 183.7 178 61.2
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 1.3e-44 183.7 183 59.6
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 1.7e-44 183.3 186 60.2
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 3.0e-44 182.6 197 60.4
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 3.0e-44 182.6 182 63.7
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 3.0e-44 182.6 180 65.0
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 5.1e-44 181.8 182 63.7
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 5.1e-44 181.8 182 63.7
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 6.6e-44 181.4 188 60.6
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 6.6e-44 181.4 200 60.5
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 6.6e-44 181.4 200 60.5
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.1e-43 180.6 182 63.2
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.5e-43 180.3 190 62.1
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 1.9e-43 179.9 184 62.0
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 3.3e-43 179.1 169 66.3
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 4.3e-43 178.7 181 59.1
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 5.6e-43 178.3 182 60.4
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 5.6e-43 178.3 149 69.1
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 1.3e-42 177.2 179 59.2
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 1.3e-42 177.2 161 64.6
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 2.1e-42 176.4 183 60.7
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 4.8e-42 175.3 186 59.1
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 4.8e-42 175.3 180 60.0
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 6.2e-42 174.9 161 64.0
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 8.1e-42 174.5 183 60.1
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 1.8e-41 173.3 180 60.6
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 1.8e-41 173.3 177 62.7
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.2e-40 170.6 177 59.9
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 2.0e-40 169.9 171 59.6
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 3.4e-40 169.1 171 61.4
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 3.4e-40 169.1 183 57.9
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 3.4e-40 169.1 180 60.6
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 4.5e-40 168.7 204 56.9
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 5.8e-40 168.3 173 61.8
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 5.8e-40 168.3 173 61.8
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 7.6e-40 167.9 124 73.4
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 9.9e-40 167.5 151 64.9
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 9.9e-40 167.5 180 60.0
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 4.9e-39 165.2 113 79.6
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 4.9e-39 165.2 183 57.4
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 6.4e-39 164.9 121 75.2
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 6.4e-39 164.9 173 59.5
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 8.4e-39 164.5 190 55.3
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 3.2e-38 162.5 180 58.3
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 3.2e-38 162.5 181 59.1
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 4.2e-38 162.2 183 57.4
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 7.1e-38 161.4 178 58.4
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 7.1e-38 161.4 173 58.4
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 1.0e-36 157.5 184 55.4
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 1.8e-36 156.8 191 55.5
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 5.1e-36 155.2 187 54.0
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 5.1e-36 155.2 211 50.2
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 5.1e-36 155.2 170 58.8
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 8.7e-36 154.5 119 72.3
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 1.5e-35 153.7 126 72.2
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 2.5e-35 152.9 128 67.2
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 3.3e-35 152.5 180 56.1
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 5.6e-35 151.8 191 53.9
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 9.6e-35 151.0 191 53.9
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 1.5e-32 143.7 171 56.1
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 9.3e-30 134.4 178 49.4
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 1.6e-29 133.7 177 49.7
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 1.8e-28 130.2 171 49.1
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 5.1e-28 128.6 264 39.0
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 1.5e-27 127.1 180 51.7
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 4.3e-27 125.6 121 58.7
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 3.7e-26 122.5 108 61.1
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 1.4e-25 120.6 195 43.6
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 5.3e-25 118.6 125 57.6
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 4.5e-24 115.5 116 60.3
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 3.9e-20 102.4 79 63.3
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 5.1e-20 102.1 130 46.9
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 1.4e-17 94.0 185 42.2
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 5.9e-16 88.6 111 55.0
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 1.3e-15 87.4 357 28.9
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.9e-14 83.6 67 70.1
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 2.5e-14 83.2 86 52.3
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 3.6e-13 79.3 106 49.1
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 6.1e-13 78.6 108 53.7
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 1.8e-09 67.0 81 49.4
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 3.1e-09 66.2 49 73.5
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 2.0e-08 63.5 108 49.1
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 1.3e-07 60.8 63 58.7


User provided reference genes

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