Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20943 Brassica carinata HOM05D000424 ORTHO05D000355 4.6e-70 267.7 127 100.0
A05p34270 Brassica napus HOM05D000424 ORTHO05D000355 7.6e-25 117.5 129 52.7
BraA05t22248Z Brassica rapa HOM05D000424 ORTHO05D000355 7.6e-25 117.5 129 52.7
Sp3g13410 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.1e-23 113.6 129 51.2
BolC5t33889H Brassica oleracea HOM05D000424 ORTHO05D000355 3.2e-23 112.1 132 48.5
AT3G15200 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 5.5e-23 111.3 127 48.8
BcaB06g29544 Brassica carinata HOM05D000424 ORTHO05D000355 2.1e-22 109.4 129 48.8
AL3G27590 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 6.0e-22 107.8 90 65.6
C05p52030 Brassica napus HOM05D000424 ORTHO05D000355 5.7e-20 101.3 129 46.5
MD03G1231900 Malus domestica HOM05D000424 ORTHO05D000355 6.3e-19 97.8 152 35.5
Lj1g0003427 Lotus japonicus HOM05D000424 ORTHO05D000355 1.5e-17 93.2 157 35.7
Thhalv10022416m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 3.2e-15 85.5 129 41.1
CARHR090190 Cardamine hirsuta HOM05D000424 ORTHO05D000355 5.5e-15 84.7 134 38.1
DCAR_020995 Daucus carota HOM05D000424 ORTHO05D000355 7.2e-15 84.3 147 33.3
Carub.0003s1485 Capsella rubella HOM05D000424 ORTHO05D000355 6.1e-14 81.3 125 40.8
Aa31LG8G2400 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.0e-13 80.5 133 38.3
THA.LOC104815560 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 1.4e-13 80.1 125 36.8
Cfa020605 Carpinus fangiana HOM05D000424 ORTHO05D000355 1.1e-12 77.0 134 35.8
Potri.011G115500 Populus trichocarpa HOM05D000424 ORTHO05D000355 1.9e-12 76.3 139 33.8
Nitab4.5_0000332g0170 Nicotiana tabacum HOM05D000424 ORTHO05D000355 5.7e-12 74.7 147 30.6
ECA236G1506 Erigeron canadensis HOM05D000424 ORTHO05D000355 1.3e-11 73.6 135 33.3
arahy.Tifrunner.gnm1.ann1.HU2A4G Arachis hypogaea HOM05D000424 ORTHO05D000355 1.7e-11 73.2 142 30.3
Nn1g06443 Nelumbo nucifera HOM05D000424 ORTHO05D000355 1.7e-11 73.2 61 52.5
MD11G1253000 Malus domestica HOM05D000424 ORTHO05D000355 2.8e-11 72.4 127 32.3
vmacro11889 Vaccinium macrocarpon HOM05D000424 ORTHO05D000355 4.8e-11 71.6 145 31.0
Haze_09411 Corylus avellana HOM05D000424 ORTHO05D000355 2.4e-10 69.3 131 33.6
Lj1P839T30 Lonicera japonica HOM05D000424 ORTHO05D000355 2.4e-10 69.3 120 34.2
Dinv20202 Davidia involucrata HOM05D000424 ORTHO05D000355 6.9e-10 67.8 126 33.3
TWI38G2061 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 6.9e-10 67.8 132 31.8
Ah.05g169850 Amaranthus hybridus HOM05D000424 ORTHO05D000355 2.0e-09 66.2 126 31.0
arahy.Tifrunner.gnm1.ann1.2M6GB4 Arachis hypogaea HOM05D000424 ORTHO05D000355 2.6e-09 65.9 134 29.9
arahy.Tifrunner.gnm1.ann1.E5BCQS Arachis hypogaea HOM05D000424 ORTHO05D000355 2.6e-09 65.9 134 29.9
arahy.Tifrunner.gnm1.ann1.MX8YYA Arachis hypogaea HOM05D000424 ORTHO05D000355 2.6e-09 65.9 134 29.9
AUR62026706 Chenopodium quinoa HOM05D000424 ORTHO05D000355 2.6e-09 65.9 78 42.3
PGSC0003DMG400015326 Solanum tuberosum HOM05D000424 ORTHO05D000355 2.6e-09 65.9 132 29.5
CANSAT35G0249 Cannabis sativa HOM05D000424 ORTHO05D000355 4.5e-09 65.1 94 36.2
Aqoxy4G00696 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 5.9e-09 64.7 126 31.7
AUR62018934 Chenopodium quinoa HOM05D000424 ORTHO05D000355 5.9e-09 64.7 126 31.7
Sopen12g005750 Solanum pennellii HOM05D000424 ORTHO05D000355 7.7e-09 64.3 132 29.5
EL10Ac1g01198 Beta vulgaris HOM05D002285 ORTHO05D004192 1.3e-08 63.5 120 30.8
Solyc12g014000.3 Solanum lycopersicum HOM05D000424 ORTHO05D000355 1.3e-08 63.5 132 29.5
vmacro23189 Vaccinium macrocarpon HOM05D000424 ORTHO05D000355 1.7e-08 63.2 145 29.0
AUR62027777 Chenopodium quinoa HOM05D000424 ORTHO05D000355 2.2e-08 62.8 126 31.7
Nitab4.5_0003033g0080 Nicotiana tabacum HOM05D000424 ORTHO05D000355 2.2e-08 62.8 133 29.3
ClCG09G010720 Citrullus lanatus HOM05D000424 ORTHO05D000355 6.5e-08 61.2 128 30.5
TPR.G7961 Trifolium pratense HOM05D000424 ORTHO05D000355 6.5e-08 61.2 116 32.8
CAN.G1226.19 Capsicum annuum HOM05D000424 ORTHO05D000355 1.1e-07 60.5 138 29.7
Peaxi162Scf00258g00620 Petunia axillaris HOM05D000424 ORTHO05D000355 1.1e-07 60.5 131 29.0
Peaxi162Scf00000g00292 Petunia axillaris HOM05D000424 ORTHO05D000355 1.4e-07 60.1 128 28.9
HanXRQChr03g0070621 Helianthus annuus HOM05D000424 ORTHO05D000355 1.9e-07 59.7 123 30.9
Sc03g0010190 Simmondsia chinensis HOM05D000424 ORTHO05D000355 3.2e-07 58.9 129 27.9
CSS0037313 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 7.2e-07 57.8 138 28.3
Lalb_Chr14g0367221 Lupinus albus HOM05D000424 ORTHO05D000355 9.4e-07 57.4 135 28.1
CSS0017032 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.2e-06 57.0 137 28.5
Glyma.13G273600 Glycine max HOM05D000424 ORTHO05D000355 2.1e-06 56.2 55 49.1
VMungo1080G0876 Vigna mungo HOM05D000424 ORTHO05D000355 2.1e-06 56.2 135 28.1
Rhsim06G0202600 Rhododendron simsii HOM05D000424 ORTHO05D000355 4.7e-06 55.1 126 30.2
PGR083G2098 Punica granatum HOM05D000424 ORTHO05D000355 6.1e-06 54.7 129 28.7
MELO3C013175.2 Cucumis melo HOM05D000424 ORTHO05D000355 7.9e-06 54.3 93 35.5
Lsat_1_v5_gn_7_104501 Lactuca sativa HOM05D000424 ORTHO05D000355 7.9e-06 54.3 127 29.1
Phvul.005G075100 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 7.9e-06 54.3 56 46.4


User provided reference genes

Program Settings