Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 3.1e-67 258.5 141 100.0
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 1.0e-54 216.9 142 87.3
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 1.0e-54 216.9 142 87.3
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 1.0e-54 216.9 142 87.3
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 8.7e-54 213.8 141 85.1
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 2.5e-53 212.2 142 85.9
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 2.5e-53 212.2 142 85.9
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 6.9e-51 204.1 140 83.6
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 8.7e-46 187.2 141 73.8
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 4.8e-44 181.4 126 78.6
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 4.9e-41 171.4 122 74.6
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 1.6e-31 139.8 116 69.0
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 7.7e-18 94.4 123 46.3
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 3.8e-17 92.0 133 44.4
CARHR091020 Cardamine hirsuta HOM05D007527 ORTHO05D009523 1.9e-16 89.7 79 62.0
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 2.5e-16 89.4 134 44.8
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 2.5e-16 89.4 133 44.4
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 4.2e-16 88.6 134 44.8
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 1.2e-15 87.0 141 39.7
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 1.6e-15 86.7 134 44.0
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 6.1e-15 84.7 84 56.0
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 5.2e-14 81.6 137 41.6
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 5.2e-14 81.6 138 37.0
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 5.2e-14 81.6 120 44.2
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 8.8e-14 80.9 92 52.2
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 8.8e-14 80.9 127 40.2
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 8.8e-14 80.9 128 41.4
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 1.1e-13 80.5 58 72.4
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 3.3e-13 79.0 65 60.0
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 3.3e-13 79.0 114 40.4
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 3.3e-13 79.0 127 44.9
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 3.3e-13 79.0 59 67.8
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 4.4e-13 78.6 91 50.5
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 4.4e-13 78.6 122 41.8
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 5.7e-13 78.2 138 37.0
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 5.7e-13 78.2 140 40.0
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 5.7e-13 78.2 59 66.1
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 5.7e-13 78.2 125 41.6
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 7.4e-13 77.8 97 45.4
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 1.3e-12 77.0 123 40.7
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.7e-12 76.6 57 66.7
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 2.8e-12 75.9 65 53.8
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 2.8e-12 75.9 63 65.1
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 3.7e-12 75.5 123 41.5
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 4.8e-12 75.1 59 66.1
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 4.8e-12 75.1 59 66.1
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 4.8e-12 75.1 130 40.0
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 4.8e-12 75.1 131 37.4
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 6.3e-12 74.7 121 41.3
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 8.2e-12 74.3 46 80.4
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 8.2e-12 74.3 86 48.8
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 8.2e-12 74.3 74 50.0
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 1.1e-11 73.9 61 60.7
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 1.1e-11 73.9 62 58.1
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 1.1e-11 73.9 127 38.6
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 1.4e-11 73.6 82 47.6
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 1.4e-11 73.6 58 60.3
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 1.4e-11 73.6 71 50.7
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 1.8e-11 73.2 77 50.6
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 2.4e-11 72.8 134 39.6
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 3.1e-11 72.4 114 36.8
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 4.1e-11 72.0 97 44.3
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 4.1e-11 72.0 58 60.3
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 4.1e-11 72.0 122 39.3
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 5.3e-11 71.6 93 40.9
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 5.3e-11 71.6 93 40.9
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 5.3e-11 71.6 93 40.9
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 7.0e-11 71.2 98 43.9
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 9.1e-11 70.9 63 54.0
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 9.1e-11 70.9 58 60.3
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 1.2e-10 70.5 71 49.3
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 1.2e-10 70.5 65 49.2
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 1.6e-10 70.1 73 53.4
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 1.6e-10 70.1 58 60.3
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 2.0e-10 69.7 93 41.9
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 2.0e-10 69.7 103 43.7
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 2.0e-10 69.7 123 39.0
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 2.0e-10 69.7 126 38.9
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 2.0e-10 69.7 71 53.5
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 2.6e-10 69.3 113 41.6
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 2.6e-10 69.3 63 54.0
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 3.5e-10 68.9 73 47.9
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 5.9e-10 68.2 71 52.1
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 5.9e-10 68.2 94 39.4
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 7.7e-10 67.8 67 53.7
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 7.7e-10 67.8 92 45.7
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 7.7e-10 67.8 58 58.6
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 1.0e-09 67.4 69 52.2
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 1.3e-09 67.0 67 52.2
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.7e-09 66.6 128 38.3
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 5.0e-09 65.1 137 34.3
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 5.0e-09 65.1 60 51.7
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 1.5e-08 63.5 58 53.4
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 3.2e-08 62.4 69 44.9
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 4.2e-08 62.0 91 40.7
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 7.2e-08 61.2 52 57.7
Pp3c10_2350 Physcomitrium patens HOM05D007527 ORTHO05D009523 1.6e-07 60.1 78 42.3
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 3.6e-07 58.9 96 42.7
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.0e-06 55.8 45 62.2


User provided reference genes

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