Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20861 Brassica carinata HOM05D009524 ORTHO05D001207 1.3e-91 339.7 173 100.0
BcaB04g20858 Brassica carinata HOM05D009524 ORTHO05D001207 1.1e-74 283.5 173 82.7
BraA01t03775Z Brassica rapa HOM05D009524 ORTHO05D001207 2.4e-74 282.3 173 82.7
BcaC09g48672 Brassica carinata HOM05D009524 ORTHO05D001207 3.2e-74 282.0 173 82.7
C01p47080 Brassica napus HOM05D009524 ORTHO05D001207 3.2e-74 282.0 173 82.7
BolC1t04674H Brassica oleracea HOM05D009524 ORTHO05D001207 5.4e-74 281.2 173 82.1
A01p37140 Brassica napus HOM05D009524 ORTHO05D001207 1.2e-73 280.0 173 82.1
BolC3t13318H Brassica oleracea HOM05D009524 ORTHO05D001207 1.7e-72 276.2 173 79.2
C03p08210 Brassica napus HOM05D009524 ORTHO05D001207 3.0e-72 275.4 173 79.8
BcaB04g20860 Brassica carinata HOM05D009524 ORTHO05D001207 6.6e-72 274.2 171 82.5
A03p07210 Brassica napus HOM05D009524 ORTHO05D001207 3.3e-71 271.9 173 78.6
BraA03t10043Z Brassica rapa HOM05D009524 ORTHO05D001207 7.3e-71 270.8 172 78.5
AL3G30140 Arabidopsis lyrata HOM05D009524 ORTHO05D001207 3.7e-54 215.3 178 66.9
Thhalv10022234m.g Eutrema salsugineum HOM05D009524 ORTHO05D001207 2.2e-51 206.1 181 65.2
AT3G17152 Arabidopsis thaliana HOM05D009524 ORTHO05D001207 3.8e-51 205.3 178 64.0
CARHR092420 Cardamine hirsuta HOM05D009524 ORTHO05D001207 9.3e-50 200.7 181 63.0
Carub.0003s1690 Capsella rubella HOM05D009524 ORTHO05D001207 7.4e-47 191.0 171 60.8
CARHR092410 Cardamine hirsuta HOM05D009524 ORTHO05D001207 9.7e-47 190.7 180 62.8
CARHR092400 Cardamine hirsuta HOM05D009524 ORTHO05D001207 4.1e-37 158.7 173 55.5
AT3G17150 Arabidopsis thaliana HOM05D009524 ORTHO05D001207 2.0e-36 156.4 178 54.5
Carub.0003s1689 Capsella rubella HOM05D009524 ORTHO05D001207 1.0e-35 154.1 174 52.9
Thhalv10022317m.g Eutrema salsugineum HOM05D009524 ORTHO05D001207 1.4e-34 150.2 177 51.4
Sp3g15360 Schrenkiella parvula HOM05D009524 ORTHO05D014763 7.2e-34 147.9 119 64.7
AL3G30130 Arabidopsis lyrata HOM05D009524 ORTHO05D001207 3.3e-31 139.0 145 58.6
THA.LOC104802609 Tarenaya hassleriana HOM05D009524 ORTHO05D001207 9.7e-31 137.5 167 46.1
Aa31LG8G4150 Aethionema arabicum HOM05D009524 ORTHO05D001207 4.2e-26 122.1 119 53.8
PGR031G2424 Punica granatum HOM05D001578 ORTHO05D001207 3.3e-23 112.5 162 40.1
Cpa.g.sc9.24 Carica papaya HOM05D001578 ORTHO05D001207 5.3e-21 105.1 149 38.3
Gohir.D01G023568 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.6e-20 103.6 145 38.6
Gorai.002G031200 Gossypium raimondii HOM05D001578 ORTHO05D001207 1.6e-20 103.6 146 38.4
Gohir.A01G035300 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.5e-18 97.1 146 36.3
Duzib052G0880 Durio zibethinus HOM05D001578 ORTHO05D001207 2.1e-17 93.2 145 37.2
PGR031G0994 Punica granatum HOM05D009524 ORTHO05D001207 7.0e-13 78.2 125 38.4
RcHm_v2.0_Chr2g0143761 Rosa chinensis HOM05D001578 ORTHO05D001207 4.5e-12 75.5 172 28.5
RcHm_v2.0_Chr2g0144321 Rosa chinensis HOM05D001578 ORTHO05D001207 4.5e-12 75.5 172 28.5
RcHm_v2.0_Chr7g0200071 Rosa chinensis HOM05D001578 ORTHO05D001207 4.5e-12 75.5 172 28.5
COL.COLO4_34578 Corchorus olitorius HOM05D001578 ORTHO05D001207 5.0e-11 72.0 161 26.7
Duzib151G0004 Durio zibethinus HOM05D001578 ORTHO05D001207 1.1e-10 70.9 163 28.8
Gohir.D10G180600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.5e-10 70.5 171 28.7
Gorai.011G202100 Gossypium raimondii HOM05D001578 ORTHO05D001207 1.5e-10 70.5 171 28.7
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 1.5e-10 70.5 150 32.0
BraA01t03776Z Brassica rapa HOM05D026427 ORTHO05D027957 1.9e-10 70.1 52 67.3
A01p37150 Brassica napus HOM05D026427 ORTHO05D027957 2.5e-10 69.7 52 67.3
CSS0037733 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 2.5e-10 69.7 177 29.9
Prupe.3G146800 Prunus persica HOM05D001578 ORTHO05D001207 5.5e-10 68.6 153 32.0
BolC1t04675H Brassica oleracea HOM05D026427 ORTHO05D027957 9.4e-10 67.8 52 65.4
MBI09_g01820_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 9.4e-10 67.8 146 30.8
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 1.2e-09 67.4 171 27.5
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 1.6e-09 67.0 163 28.8
Thecc.01G317500 Theobroma cacao HOM05D001578 ORTHO05D001207 2.1e-09 66.6 170 28.2
TAR365G0682 Trochodendron aralioides HOM05D001578 ORTHO05D001207 2.1e-09 66.6 151 28.5
Cfa015283 Carpinus fangiana HOM05D001578 ORTHO05D001207 3.6e-09 65.9 174 27.0
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 3.6e-09 65.9 175 26.3
TWI34G1970 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 3.6e-09 65.9 139 28.8
Duzib151G0695 Durio zibethinus HOM05D001578 ORTHO05D001207 4.7e-09 65.5 150 25.3
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 6.1e-09 65.1 175 26.3
MBI09_g02146_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 6.1e-09 65.1 149 28.2
Psat0s740g0160 Pisum sativum HOM05D001578 ORTHO05D001207 6.1e-09 65.1 157 30.6
VMungo1215G1199 Vigna mungo HOM05D001578 ORTHO05D001207 6.1e-09 65.1 158 29.1
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 8.0e-09 64.7 180 30.0
Thecc.04G305000 Theobroma cacao HOM05D001578 ORTHO05D001207 8.0e-09 64.7 150 25.3
Hma1.2p1_0078F.1_g039860 Hydrangea macrophylla HOM05D007634 ORTHO05D004310 1.0e-08 64.3 124 33.9
MBI09_g40718_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.4e-08 63.9 146 28.1
Phvul.003G117100 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.4e-08 63.9 158 29.1
C01p47090 Brassica napus HOM05D026427 ORTHO05D027957 1.8e-08 63.5 52 61.5
Lalb_Chr07g0181941 Lupinus albus HOM05D001578 ORTHO05D001207 1.8e-08 63.5 164 28.0
Psat4g021360 Pisum sativum HOM05D001578 ORTHO05D001207 1.8e-08 63.5 173 28.3
Prupe.6G197400 Prunus persica HOM05D004113 ORTHO05D005233 1.8e-08 63.5 158 30.4
Duzib052G0195 Durio zibethinus HOM05D001578 ORTHO05D001207 2.3e-08 63.2 150 26.7
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 3.0e-08 62.8 174 25.3
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 3.0e-08 62.8 174 25.3
CSS0020686 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 4.0e-08 62.4 150 29.3
Glyma.17G036300 Glycine max HOM05D001578 ORTHO05D001207 4.0e-08 62.4 150 28.7
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 4.0e-08 62.4 186 24.7
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 4.0e-08 62.4 173 28.9
CSS0012414 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 5.2e-08 62.0 150 29.3
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 5.2e-08 62.0 169 27.8
COL.COLO4_34577 Corchorus olitorius HOM05D001578 ORTHO05D001207 5.2e-08 62.0 150 25.3
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 6.8e-08 61.6 154 25.3
VMungo1215G0431 Vigna mungo HOM05D001578 ORTHO05D001207 6.8e-08 61.6 150 29.3
Sc01g0006950 Simmondsia chinensis HOM05D004113 ORTHO05D005233 8.8e-08 61.2 141 34.0
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 8.8e-08 61.2 148 26.4
DCAR_028534 Daucus carota HOM05D004113 ORTHO05D005233 1.2e-07 60.8 156 25.0
Lalb_Chr12g0200781 Lupinus albus HOM05D001578 ORTHO05D001207 1.2e-07 60.8 169 27.8
TAR365G1026 Trochodendron aralioides HOM05D001578 ORTHO05D001207 1.2e-07 60.8 139 29.5
COL.COLO4_34581 Corchorus olitorius HOM05D001578 ORTHO05D001207 1.5e-07 60.5 161 25.5
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 2.0e-07 60.1 146 24.7
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 2.0e-07 60.1 181 28.7
TWI09G1118 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 2.0e-07 60.1 152 27.6
Ciclev10006791m.g Citrus clementina HOM05D001578 ORTHO05D001207 4.4e-07 58.9 150 30.0
Lsat_1_v5_gn_6_301 Lactuca sativa HOM05D001578 ORTHO05D001207 4.4e-07 58.9 175 26.3
Phvul.003G117300 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 4.4e-07 58.9 150 28.0
TAR365G0500 Trochodendron aralioides HOM05D001578 ORTHO05D001207 4.4e-07 58.9 150 26.7
Medtr2g033630 Medicago truncatula HOM05D001578 ORTHO05D001207 5.7e-07 58.5 161 27.3
Prupe.3G007700 Prunus persica HOM05D001578 ORTHO05D001207 5.7e-07 58.5 150 27.3
vmacro15637 Vaccinium macrocarpon HOM05D000074 ORTHO05D001262 5.7e-07 58.5 162 30.2
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 7.5e-07 58.2 150 27.3
MD03G1248700 Malus domestica HOM05D001578 ORTHO05D001207 7.5e-07 58.2 149 30.9
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 7.5e-07 58.2 145 26.2
Sabra10G0043700 Salix brachista HOM05D001578 ORTHO05D001207 7.5e-07 58.2 160 33.8
TAR636G0184 Trochodendron aralioides HOM05D004113 ORTHO05D005233 9.8e-07 57.8 156 30.8
TAR636G1790 Trochodendron aralioides HOM05D004113 ORTHO05D005233 9.8e-07 57.8 156 30.8
MD03G1249700 Malus domestica HOM05D001578 ORTHO05D001207 1.3e-06 57.4 146 28.8
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 1.3e-06 57.4 150 27.3
Manes.15G098100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.3e-06 57.4 147 26.5
Sabra10G0043600 Salix brachista HOM05D001578 ORTHO05D001207 1.7e-06 57.0 165 29.1
Lj3P834T42 Lonicera japonica HOM05D001578 ORTHO05D001207 2.2e-06 56.6 154 26.0
Lj3P834T43 Lonicera japonica HOM05D001578 ORTHO05D001207 2.2e-06 56.6 154 25.3
MD03G1249600 Malus domestica HOM05D001578 ORTHO05D001207 2.2e-06 56.6 149 32.2
Sabra10G0162100 Salix brachista HOM05D004113 ORTHO05D005233 2.2e-06 56.6 142 24.6
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 2.2e-06 56.6 166 22.9
TAR636G3366 Trochodendron aralioides HOM05D004113 ORTHO05D005233 2.2e-06 56.6 156 30.8
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 2.8e-06 56.2 142 29.6
ECA233G5780 Erigeron canadensis HOM05D001578 ORTHO05D001207 2.8e-06 56.2 157 26.1
Potri.010G063000 Populus trichocarpa HOM05D001578 ORTHO05D001207 2.8e-06 56.2 167 30.5
FAN26G3157 Fragaria x ananassa HOM05D004113 ORTHO05D005233 3.7e-06 55.8 170 27.1
MBI13_g01661_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D002265 3.7e-06 55.8 139 31.7
MD03G1250000 Malus domestica HOM05D001578 ORTHO05D001207 3.7e-06 55.8 146 28.1
Rhsim04G0241400 Rhododendron simsii HOM05D001578 ORTHO05D001207 3.7e-06 55.8 117 31.6
THA.LOC104819318 Tarenaya hassleriana HOM05D004113 ORTHO05D005233 3.7e-06 55.8 157 28.0
TPR.G25401 Trifolium pratense HOM05D001578 ORTHO05D001207 3.7e-06 55.8 175 29.7
FAN16G3582 Fragaria x ananassa HOM05D004113 ORTHO05D005233 6.3e-06 55.1 170 27.1
Peaxi162Scf00364g00014 Petunia axillaris HOM05D001578 ORTHO05D001207 6.3e-06 55.1 163 30.7
Potri.010G209800 Populus trichocarpa HOM05D004113 ORTHO05D005233 6.3e-06 55.1 147 25.9
RcHm_v2.0_Chr2g0120401 Rosa chinensis HOM05D004113 ORTHO05D005233 6.3e-06 55.1 149 28.2
FvH4_4g20480 Fragaria vesca HOM05D001578 ORTHO05D001207 8.3e-06 54.7 184 26.6
Lj4g0009388 Lotus japonicus HOM05D001578 ORTHO05D001207 8.3e-06 54.7 156 27.6
Lalb_Chr07g0181931 Lupinus albus HOM05D001578 ORTHO05D001207 8.3e-06 54.7 185 24.9
Rhsim01G0111900 Rhododendron simsii HOM05D001578 ORTHO05D001207 8.3e-06 54.7 159 27.7
RcHm_v2.0_Chr4g0425961 Rosa chinensis HOM05D001578 ORTHO05D001207 8.3e-06 54.7 176 25.6
Sp2g27680 Schrenkiella parvula HOM05D004113 ORTHO05D005233 8.3e-06 54.7 166 26.5


User provided reference genes

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