Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1606.7 838 100.0
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 0.0e+00 1399.8 855 87.1
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 0.0e+00 1377.1 851 85.9
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1367.1 840 86.7
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1366.7 843 87.2
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1366.3 843 87.1
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 0.0e+00 1365.1 849 85.4
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1361.3 842 86.9
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1358.6 843 86.7
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 0.0e+00 1351.7 850 84.6
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 0.0e+00 1345.9 846 83.9
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 0.0e+00 1342.8 845 84.5
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1297.3 851 83.8
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1293.1 846 83.5
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1286.2 845 83.3
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 0.0e+00 1267.7 906 75.3
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1247.3 850 80.7
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1198.7 846 79.2
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1152.9 725 85.7
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 0.0e+00 1132.9 855 69.9
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 9.2e-260 900.6 873 57.6
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 2.7e-259 899.0 875 58.3
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 7.8e-259 897.5 872 57.6
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 3.9e-258 895.2 860 56.7
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 2.7e-251 872.5 887 56.1
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 6.0e-251 871.3 868 56.1
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.0e-250 870.5 868 55.8
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 3.0e-250 869.0 852 57.2
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 3.0e-250 869.0 873 56.9
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 8.6e-250 867.5 862 56.5
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 2.1e-248 862.8 876 55.5
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.8e-248 862.4 868 55.4
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.6e-248 862.1 856 56.8
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 3.1e-247 859.0 830 57.8
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 6.8e-247 857.8 867 55.7
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 3.4e-246 855.5 873 55.6
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 3.4e-246 855.5 854 57.7
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 9.8e-246 854.0 862 55.9
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.4e-244 850.1 978 51.5
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 4.1e-244 848.6 867 55.1
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 3.0e-242 842.4 858 56.1
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.8e-240 835.9 868 55.4
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 4.7e-240 835.1 868 55.2
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.3e-239 832.8 876 54.8
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 2.0e-238 829.7 863 53.8
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.3e-237 827.0 866 54.8
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.3e-237 827.0 858 54.5
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.3e-237 827.0 868 55.4
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 6.4e-237 824.7 873 54.8
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.1e-236 823.9 878 53.2
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.1e-236 823.9 912 53.5
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 2.4e-236 822.8 859 53.9
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 3.2e-236 822.4 872 54.4
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 7.1e-236 821.2 880 54.5
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 7.1e-236 821.2 777 58.3
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 4.6e-235 818.5 881 53.6
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 1.0e-234 817.4 872 54.6
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.0e-234 815.8 877 54.4
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 5.1e-234 815.1 828 56.2
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 2.8e-232 809.3 876 53.1
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 8.1e-232 807.7 857 53.6
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 8.1e-232 807.7 897 51.8
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 1.1e-231 807.4 872 54.9
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 2.4e-231 806.2 868 52.6
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 5.2e-231 805.1 874 53.9
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 6.8e-231 804.7 863 53.9
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 6.8e-231 804.7 877 53.6
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.5e-230 803.5 878 53.2
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.6e-230 801.2 830 53.3
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 9.9e-230 800.8 870 52.3
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 4.9e-229 798.5 870 52.6
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.1e-228 797.3 844 53.7
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 4.2e-228 795.4 874 53.5
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 9.6e-225 784.3 845 53.4
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 6.2e-224 781.6 862 52.6
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.1e-223 780.8 873 52.3
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.4e-223 780.4 859 53.1
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 2.4e-223 779.6 877 51.8
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 6.9e-223 778.1 890 52.9
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 9.0e-223 777.7 834 53.5
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 9.0e-223 777.7 935 49.4
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 5.8e-222 775.0 759 57.7
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 9.9e-222 774.2 834 52.5
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 4.9e-221 771.9 866 51.4
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 4.2e-220 768.8 878 51.6
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 2.7e-219 766.1 777 55.5
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 1.0e-218 764.2 740 59.1
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 5.1e-218 761.9 953 48.4
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.5e-217 760.4 843 52.4
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 2.1e-216 756.5 832 53.5
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 8.1e-216 754.6 852 50.9
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 2.4e-215 753.1 879 50.9
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 3.4e-214 749.2 872 50.7
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 4.9e-213 745.3 693 58.9
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 2.7e-211 739.6 872 50.7
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 2.7e-211 739.6 873 51.7
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.7e-211 739.6 860 50.5
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.0e-210 737.6 831 51.3
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.5e-209 733.0 818 51.6
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.4e-207 727.2 858 50.5
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.4e-207 727.2 861 50.3
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 2.0e-206 723.4 795 53.8
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.6e-206 723.0 708 56.6
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 9.3e-204 714.5 894 47.9
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 3.9e-202 709.1 856 49.3
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.9e-201 706.8 763 52.6
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 4.1e-199 699.1 794 50.9
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 5.5e-196 688.7 880 47.7
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 9.7e-193 677.9 551 66.1
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.8e-192 676.4 880 46.1
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 4.1e-191 672.5 728 52.7
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 1.0e-186 657.9 830 45.9
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 3.0e-186 656.4 796 49.4
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 1.4e-183 647.5 603 57.5
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 5.0e-181 639.0 822 46.8
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.4e-178 630.9 858 46.2
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 2.9e-173 613.2 867 45.6
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 3.8e-165 586.3 868 44.4
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.6e-163 579.7 549 57.6
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 6.1e-163 578.9 912 40.7
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 1.5e-161 574.3 862 44.2
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 5.5e-156 555.8 879 42.2
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 3.0e-154 550.1 449 66.8
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 2.0e-153 547.4 789 43.1
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.1e-151 541.6 869 42.6
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.6e-145 520.4 806 41.8
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.9e-144 516.9 753 41.7
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.8e-143 514.2 1104 36.1
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 8.3e-136 488.8 746 42.9
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 5.4e-127 459.5 862 37.5
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 6.6e-125 452.6 496 51.2
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.9e-124 451.1 499 51.5
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 3.1e-114 417.2 587 46.5
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 4.5e-105 386.7 627 38.0
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 4.6e-102 376.7 801 35.0
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 1.9e-100 371.3 549 41.7
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 3.3e-92 344.0 699 34.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.0e-89 334.7 426 47.9
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 1.5e-73 282.0 383 48.8
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 5.9e-73 280.0 384 49.2
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 5.9e-73 280.0 384 49.2
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 4.6e-70 270.4 370 47.3
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 1.1e-63 249.2 319 47.6
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.1e-63 249.2 276 54.0
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 3.6e-62 244.2 279 50.9
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 3.6e-54 217.6 176 65.9
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 3.6e-54 217.6 176 65.9
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.0e-48 199.5 192 60.4
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.5e-44 183.3 254 45.7
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 1.2e-38 166.0 186 53.8
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 3.6e-38 164.5 174 56.3
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 2.3e-37 161.8 178 55.1
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 3.7e-35 154.5 137 63.5
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 1.0e-32 146.4 139 59.0
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 1.7e-32 145.6 138 55.1
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 5.4e-26 124.0 196 43.4
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 3.4e-20 104.8 465 24.3
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 7.5e-20 103.6 87 67.8
BolC2t11814H Brassica oleracea HOM05D004054 ORTHO05D004945 1.5e-15 89.4 148 44.6
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 5.6e-15 87.4 102 50.0
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 1.8e-13 82.4 167 35.3
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 3.1e-13 81.6 60 71.7
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 8.9e-13 80.1 84 45.2
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 3.2e-10 71.6 219 24.2
BolC3t17207H Brassica oleracea HOM05D004054 ORTHO05D004945 4.1e-10 71.2 41 80.5
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 1.2e-09 69.7 47 78.7
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 3.5e-09 68.2 63 52.4
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 3.5e-09 68.2 58 55.2
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-08 65.9 47 63.8
C02p23800 Brassica napus HOM05D000787 ORTHO05D003730 1.9e-07 62.4 58 65.5
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 2.8e-06 58.5 86 44.2


User provided reference genes

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