Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 3.6e-205 718.0 358 100.0
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 5.4e-169 597.8 354 85.3
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 6.0e-168 594.3 354 84.7
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 6.0e-168 594.3 354 84.7
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 3.3e-166 588.6 356 83.4
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 1.6e-165 586.3 354 84.2
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 1.5e-163 579.7 356 82.9
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 9.9e-163 577.0 356 81.5
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 6.4e-162 574.3 356 81.5
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 1.1e-161 573.5 356 81.2
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 1.4e-161 573.2 355 82.5
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 1.4e-161 573.2 355 82.5
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 4.2e-161 571.6 358 80.4
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 2.8e-157 558.9 358 81.6
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 3.4e-155 552.0 356 78.4
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.3e-151 540.0 356 76.1
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.1e-148 530.4 356 74.7
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 9.3e-145 517.3 357 72.5
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 9.3e-145 517.3 356 73.9
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 2.1e-120 436.4 354 63.8
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 5.2e-111 405.2 369 57.2
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 9.7e-110 401.0 318 62.6
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 1.3e-109 400.6 311 62.7
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 6.3e-109 398.3 292 65.4
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 5.9e-107 391.7 341 59.2
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 1.3e-106 390.6 313 60.7
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.3e-106 390.6 316 61.4
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 3.8e-106 389.0 358 55.6
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 1.1e-105 387.5 358 57.3
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 1.1e-105 387.5 325 58.5
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 1.1e-105 387.5 300 62.3
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 3.2e-105 386.0 359 56.0
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 1.6e-104 383.6 361 55.4
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 3.6e-104 382.5 359 54.9
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 8.0e-104 381.3 361 55.1
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 8.0e-104 381.3 318 59.4
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 8.0e-104 381.3 287 62.7
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 1.8e-103 380.2 359 54.9
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.0e-103 379.4 359 54.9
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 4.0e-103 379.0 320 58.8
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 5.2e-103 378.6 302 61.3
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 8.8e-103 377.9 359 56.0
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 1.2e-102 377.5 339 55.5
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 1.5e-102 377.1 326 59.5
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 2.0e-102 376.7 360 55.8
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 2.6e-102 376.3 339 54.9
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 5.7e-102 375.2 309 59.5
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 1.3e-101 374.0 313 59.7
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 1.7e-101 373.6 318 56.0
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 6.3e-101 371.7 280 62.9
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 8.3e-101 371.3 287 62.4
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 8.3e-101 371.3 310 59.4
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 1.4e-100 370.5 324 58.3
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 1.8e-100 370.2 320 56.9
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 2.4e-100 369.8 291 59.8
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 3.1e-100 369.4 311 59.2
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 5.4e-100 368.6 312 58.3
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 7.0e-100 368.2 291 61.5
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 9.1e-100 367.9 349 55.9
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 9.1e-100 367.9 308 60.1
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 9.1e-100 367.9 337 56.4
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 1.2e-99 367.5 360 54.7
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 1.2e-99 367.5 298 59.4
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 2.0e-99 366.7 357 54.6
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 4.5e-99 365.5 358 54.5
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 4.5e-99 365.5 356 54.2
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 1.7e-98 363.6 285 60.7
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 2.3e-98 363.2 363 54.0
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 2.3e-98 363.2 366 54.6
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 5.0e-98 362.1 302 58.3
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 1.9e-97 360.1 289 60.2
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 1.9e-97 360.1 293 59.7
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 4.2e-97 359.0 355 54.6
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 5.5e-97 358.6 353 54.7
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 7.2e-97 358.2 286 60.5
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 2.1e-96 356.7 383 50.4
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 6.1e-96 355.1 325 56.6
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 6.1e-96 355.1 345 54.2
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 8.0e-96 354.8 314 58.0
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 1.0e-95 354.4 355 54.9
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 1.4e-95 354.0 355 54.1
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 1.8e-95 353.6 318 56.3
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.7e-93 347.1 335 54.0
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 5.4e-92 342.0 335 53.7
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 1.2e-91 340.9 324 54.0
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 1.3e-90 337.4 275 59.3
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 8.6e-90 334.7 286 57.7
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 1.5e-89 334.0 290 56.2
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 2.8e-88 329.7 247 62.8
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 3.6e-88 329.3 337 52.8
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 6.1e-88 328.6 335 54.0
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 1.0e-87 327.8 258 62.0
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 4.0e-87 325.9 318 52.8
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 6.8e-87 325.1 254 61.4
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 2.6e-86 323.2 302 54.6
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 4.9e-85 318.9 230 67.4
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 3.2e-84 316.2 305 54.1
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 4.1e-84 315.8 257 61.1
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 9.2e-84 314.7 244 62.7
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 3.5e-83 312.8 339 48.7
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 4.7e-80 302.4 284 54.6
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 1.8e-79 300.4 239 59.4
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 5.4e-76 288.9 225 61.8
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 9.2e-76 288.1 252 57.9
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 1.7e-74 283.9 221 63.3
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 3.9e-74 282.7 222 60.4
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 1.8e-71 273.9 399 40.1
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 3.7e-69 266.2 297 45.8
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 3.0e-66 256.5 303 47.9
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 8.1e-64 248.4 176 72.7
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 8.1e-64 248.4 344 40.7
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.2e-62 244.6 289 47.1
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 7.6e-62 241.9 293 41.3
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 4.9e-61 239.2 198 58.6
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 1.0e-58 231.5 244 49.6
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 3.3e-57 226.5 268 45.9
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 4.0e-55 219.5 180 58.3
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 1.9e-52 210.7 307 43.0
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 3.9e-50 203.0 160 58.8
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 6.6e-50 202.2 308 41.6
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 8.7e-50 201.8 254 43.7
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 1.1e-47 194.9 252 41.3
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 1.2e-46 191.4 159 56.6
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 2.3e-42 177.2 240 42.1
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 2.1e-40 170.6 393 30.0
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 4.9e-37 159.5 130 59.2
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 2.1e-35 154.1 310 31.0
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.3e-32 144.8 163 49.7
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.7e-32 143.3 173 49.7
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 1.4e-31 141.4 89 66.3
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 5.8e-30 136.0 130 53.8
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 1.7e-29 134.4 151 49.0
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 6.1e-19 99.4 367 25.6
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 8.2e-16 89.0 195 31.3
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 8.5e-13 79.0 274 25.9
Cfa024306 Carpinus fangiana HOM05D005585 ORTHO05D006905 3.0e-10 70.5 248 25.4
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 1.7e-08 64.7 72 48.6


User provided reference genes

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