Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 1.1e-196 689.9 359 100.0
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 2.7e-176 622.1 354 90.7
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 6.9e-172 607.4 344 90.7
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 4.9e-170 601.3 369 86.4
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 4.9e-170 601.3 358 85.8
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.4e-169 599.7 340 90.9
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.4e-169 599.7 366 85.2
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 7.1e-169 597.4 340 90.6
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 7.9e-168 594.0 357 84.3
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 2.3e-167 592.4 364 85.4
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 6.7e-167 590.9 357 83.8
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 2.1e-165 585.9 364 84.6
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 2.8e-165 585.5 362 84.5
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 6.2e-165 584.3 357 83.2
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 3.1e-164 582.0 374 83.2
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 2.7e-160 568.9 368 82.6
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 5.8e-155 551.2 366 80.1
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 4.1e-148 528.5 364 75.5
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.3e-146 523.5 378 73.8
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 3.8e-146 521.9 363 74.7
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.4e-145 520.0 363 74.4
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.4e-145 520.0 360 74.2
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 2.1e-144 516.2 364 74.5
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 7.9e-144 514.2 364 73.9
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.8e-143 513.1 366 73.0
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 9.7e-142 507.3 361 72.6
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 2.8e-141 505.8 361 72.3
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 1.1e-140 503.8 286 92.0
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.8e-140 503.1 362 71.5
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.8e-140 503.1 370 71.1
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.2e-139 500.4 366 70.2
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 9.4e-137 490.7 347 73.5
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 4.7e-136 488.4 398 66.3
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 5.1e-135 485.0 391 66.5
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.1e-112 409.8 365 60.5
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.8e-111 406.8 363 61.2
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.0e-111 406.0 365 59.7
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.2e-111 405.2 365 59.7
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 8.8e-111 404.4 366 60.4
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 2.0e-110 403.3 365 60.3
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 2.0e-110 403.3 365 58.9
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 9.8e-110 401.0 365 58.9
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.2e-109 399.8 364 59.6
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.7e-109 399.1 365 57.8
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.4e-108 397.1 366 59.6
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.4e-108 396.4 363 59.2
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 7.0e-108 394.8 378 56.3
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 4.5e-107 392.1 366 58.2
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 4.5e-107 392.1 368 58.4
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 5.9e-107 391.7 366 56.3
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 6.6e-106 388.3 364 56.9
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.5e-105 387.1 366 57.7
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.8e-104 382.9 368 55.7
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 3.6e-104 382.5 369 56.1
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.4e-103 380.6 368 54.6
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.4e-103 380.6 365 56.2
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.3e-103 379.8 363 56.7
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 6.8e-103 378.3 366 56.6
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 6.8e-103 378.3 367 56.1
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 3.4e-102 375.9 367 55.0
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 5.7e-102 375.2 366 56.0
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 7.5e-102 374.8 365 54.5
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.7e-101 372.5 364 56.0
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 4.9e-101 372.1 368 57.3
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 8.3e-101 371.3 367 54.8
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 8.3e-101 371.3 365 55.3
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 8.3e-101 371.3 368 54.1
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 7.0e-100 368.2 366 56.3
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 7.0e-100 368.2 366 56.3
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 3.5e-99 365.9 363 55.1
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 5.9e-99 365.2 369 53.4
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.7e-98 363.6 364 52.5
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.9e-98 362.8 365 53.4
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 3.9e-98 362.5 364 52.7
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.9e-98 362.5 364 52.7
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 5.0e-98 362.1 361 53.7
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 1.5e-97 360.5 364 52.7
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.3e-97 359.4 364 54.4
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 4.3e-97 359.0 364 51.9
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 7.3e-97 358.2 365 51.8
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 7.3e-97 358.2 364 52.2
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 9.5e-97 357.8 364 53.0
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 2.1e-96 356.7 364 51.6
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.0e-95 354.4 365 52.6
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 1.8e-95 353.6 356 52.0
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 4.0e-95 352.4 359 51.5
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.2e-94 350.9 379 50.1
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 6.4e-93 345.1 369 51.2
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 8.3e-93 344.7 361 50.7
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 1.1e-92 344.4 364 51.4
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.9e-92 343.6 366 52.5
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 3.2e-92 342.8 365 51.5
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 7.0e-92 341.7 365 50.7
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 9.2e-92 341.3 365 49.9
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 2.0e-91 340.1 363 51.2
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 3.5e-91 339.3 363 50.7
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.0e-91 338.6 386 49.7
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 1.0e-90 337.8 365 51.5
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.7e-90 337.0 308 58.8
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 3.9e-90 335.9 372 50.8
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.1e-89 334.3 321 57.6
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 2.5e-89 333.2 401 46.9
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 9.5e-89 331.3 369 50.1
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 9.5e-89 331.3 365 48.8
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.2e-88 330.9 333 52.9
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 2.1e-88 330.1 361 49.3
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 1.8e-87 327.0 363 49.9
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 3.1e-87 326.2 371 48.5
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 2.0e-86 323.6 401 46.4
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 2.9e-85 319.7 483 42.0
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 6.4e-85 318.5 369 48.2
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 1.4e-84 317.4 284 59.2
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.4e-84 317.4 314 54.8
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.9e-84 317.0 283 58.7
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 3.2e-84 316.2 351 50.4
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 2.1e-83 313.5 392 45.2
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.0e-82 311.2 505 40.2
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 8.6e-82 308.1 333 52.6
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 3.6e-80 302.8 359 44.8
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.8e-79 300.4 373 47.7
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 2.3e-79 300.1 362 48.3
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.1e-79 299.7 314 54.1
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 7.5e-78 295.0 356 47.5
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.1e-76 291.2 369 44.7
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 2.4e-76 290.0 369 42.5
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 9.2e-76 288.1 317 51.4
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 3.3e-73 279.6 308 50.3
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.1e-68 264.6 307 47.9
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.1e-68 264.6 556 36.2
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.7e-67 260.0 206 64.1
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-66 257.7 208 64.9
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 6.9e-63 245.4 208 59.1
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.2e-60 236.5 227 53.7
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.6e-59 234.2 207 57.0
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.3e-57 225.3 163 71.2
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 7.3e-57 225.3 472 32.2
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 8.1e-56 221.9 165 69.7
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.2e-54 218.0 312 43.3
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 1.2e-54 218.0 316 38.9
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.5e-54 217.6 165 69.1
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.6e-54 216.9 165 68.5
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.4e-54 216.5 165 69.7
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.8e-54 215.7 162 69.1
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 5.4e-52 209.1 165 63.6
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 6.0e-51 205.7 375 36.3
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.3e-50 203.8 335 37.3
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 7.4e-49 198.7 165 65.5
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 8.4e-45 185.3 308 38.0
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.2e-44 183.0 381 34.4
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.3e-44 181.8 206 49.5
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.7e-43 180.3 206 49.0
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.5e-43 179.9 155 58.1
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 6.0e-43 179.1 373 34.3
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 7.9e-43 178.7 201 50.2
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.1e-41 174.9 381 33.3
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-41 174.5 229 48.9
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.4e-38 163.3 370 31.1
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 5.8e-38 162.5 283 38.5
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 7.6e-38 162.2 364 31.6
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.5e-36 157.1 205 42.4
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 5.1e-34 149.4 200 41.0
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-33 147.9 110 70.9
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.7e-33 146.0 126 61.1
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 1.1e-31 141.7 134 58.2
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 1.2e-30 138.3 370 27.6
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-28 131.3 152 50.7
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 5.1e-26 122.9 164 45.7
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 9.7e-25 118.6 130 44.6
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.2e-24 117.5 157 42.0
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 1.4e-23 114.8 157 41.4
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 4.1e-23 113.2 172 39.5
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.1e-19 100.9 134 43.3
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 7.4e-17 92.4 138 42.8
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 7.4e-17 92.4 202 32.7
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 1.3e-16 91.7 137 43.1
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.7e-16 91.3 302 30.5
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 3.1e-07 60.5 419 22.7


User provided reference genes

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