Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 4.7e-29 130.6 68 100.0
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 8.2e-26 119.8 69 92.8
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 8.2e-26 119.8 69 92.8
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 8.2e-26 119.8 68 89.7
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 5.3e-25 117.1 69 89.9
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 1.2e-24 115.9 68 85.3
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 2.0e-24 115.2 68 86.8
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 3.5e-24 114.4 68 83.8
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 3.5e-24 114.4 68 83.8
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 3.5e-24 114.4 68 83.8
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 3.5e-24 114.4 66 84.8
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 7.7e-24 113.2 68 82.4
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 7.7e-24 113.2 65 86.2
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 3.2e-22 107.8 68 79.4
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 7.2e-22 106.7 68 82.4
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 9.4e-22 106.3 72 76.4
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 2.7e-21 104.8 65 81.5
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 8.5e-15 83.2 71 62.0
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 1.9e-14 82.0 59 66.1
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 7.2e-14 80.1 68 60.3
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 1.6e-13 79.0 68 60.3
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 2.7e-13 78.2 68 60.3
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 1.0e-12 76.3 55 65.5
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 1.0e-12 76.3 62 59.7
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 1.8e-12 75.5 56 64.3
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 3.0e-12 74.7 63 57.1
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 5.2e-12 73.9 59 59.3
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 6.8e-12 73.6 66 56.1
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 6.8e-12 73.6 66 56.1
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 8.8e-12 73.2 64 59.4
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 1.2e-11 72.8 66 56.1
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 1.2e-11 72.8 66 56.1
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 1.2e-11 72.8 66 57.6
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 1.5e-11 72.4 52 67.3
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 1.5e-11 72.4 66 54.5
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 1.5e-11 72.4 52 61.5
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 1.5e-11 72.4 51 64.7
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 3.4e-11 71.2 65 56.9
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 4.4e-11 70.9 55 52.7
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 4.4e-11 70.9 69 55.1
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 4.4e-11 70.9 53 60.4
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 5.7e-11 70.5 55 61.8
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 7.5e-11 70.1 52 65.4
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 9.8e-11 69.7 56 57.1
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 9.8e-11 69.7 56 57.1
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 9.8e-11 69.7 66 54.5
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 1.3e-10 69.3 51 62.7
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 1.3e-10 69.3 65 55.4
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 1.3e-10 69.3 52 57.7
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 1.7e-10 68.9 51 62.7
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 1.7e-10 68.9 65 55.4
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 2.2e-10 68.6 62 54.8
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 3.7e-10 67.8 54 59.3
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 4.8e-10 67.4 58 55.2
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 4.8e-10 67.4 57 54.4
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 6.3e-10 67.0 55 58.2
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 8.3e-10 66.6 49 65.3
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 1.1e-09 66.2 46 67.4
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 1.1e-09 66.2 64 51.6
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.1e-09 66.2 64 51.6
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.4e-09 65.9 64 51.6
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.4e-09 65.9 64 51.6
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 1.8e-09 65.5 62 56.5
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 2.4e-09 65.1 64 50.0
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 5.4e-09 63.9 67 50.7
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 7.0e-09 63.5 65 52.3
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 9.1e-09 63.2 49 61.2
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 9.1e-09 63.2 63 47.6
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 9.1e-09 63.2 48 60.4
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 1.2e-08 62.8 62 50.0
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 1.6e-08 62.4 49 61.2
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 5.9e-08 60.5 55 50.9
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 7.7e-08 60.1 50 54.0
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 1.7e-07 58.9 57 50.9
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 2.3e-07 58.5 66 47.0
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 2.3e-07 58.5 55 49.1
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 2.3e-07 58.5 55 49.1
HanXRQChr05g0152891 Helianthus annuus HOM05D007790 ORTHO05D009880 5.0e-07 57.4 32 75.0
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 6.6e-07 57.0 61 44.3
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 6.6e-07 57.0 52 48.1
CBR_g39724 Chara braunii HOM05D007790 ORTHO05D131067 3.3e-06 54.7 51 56.9
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 5.5e-06 53.9 76 38.2
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 7.2e-06 53.5 54 48.1
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 9.5e-06 53.1 46 54.3
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 9.5e-06 53.1 57 47.4


User provided reference genes

Program Settings