Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1187.9 688 100.0
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1166.0 692 98.1
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1166.0 692 98.1
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 0.0e+00 1164.4 692 96.2
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1155.2 691 97.5
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 0.0e+00 1139.0 722 93.4
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 0.0e+00 1135.6 691 91.3
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1135.2 689 94.8
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 0.0e+00 1130.2 691 90.4
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 0.0e+00 1129.0 690 94.1
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1124.8 691 91.3
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 0.0e+00 1124.0 689 90.1
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 0.0e+00 1123.2 691 91.2
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 0.0e+00 1123.2 691 93.1
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 0.0e+00 1120.9 690 94.8
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 0.0e+00 1120.9 690 94.8
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 0.0e+00 1119.0 690 89.9
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 0.0e+00 1112.8 693 91.8
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 0.0e+00 1104.4 692 88.9
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 1.0e-301 1039.6 689 83.7
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 2.2e-283 978.8 688 79.8
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 3.7e-283 978.0 688 78.8
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 4.8e-283 977.6 688 78.5
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 6.3e-283 977.2 688 78.3
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 7.0e-282 973.8 688 77.0
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 7.0e-282 973.8 688 78.2
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.2e-281 973.0 688 76.9
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.7e-281 971.8 688 78.2
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.8e-280 968.0 682 81.1
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 1.1e-279 966.5 688 77.5
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 4.2e-279 964.5 689 79.8
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.2e-278 963.0 692 76.9
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 2.8e-278 961.8 688 77.3
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.6e-278 961.4 685 78.2
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 4.7e-278 961.1 682 78.4
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 5.7e-276 954.1 688 76.7
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 9.8e-276 953.4 694 76.9
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 3.7e-275 951.4 678 76.8
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 4.9e-275 951.0 688 78.2
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 8.3e-275 950.3 670 77.3
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.4e-274 949.5 682 78.2
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 2.4e-274 948.7 688 76.6
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 3.1e-274 948.3 687 78.2
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 9.2e-274 946.8 688 77.8
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.2e-273 946.4 688 77.9
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.2e-273 946.4 688 75.7
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.6e-273 946.0 686 77.0
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.7e-273 945.3 682 77.9
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 4.5e-273 944.5 688 75.6
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 7.8e-273 943.7 667 78.6
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 1.0e-272 943.3 682 76.7
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 1.1e-271 939.9 682 74.9
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 5.6e-271 937.6 663 78.0
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 7.3e-271 937.2 655 77.4
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 9.5e-271 936.8 688 76.3
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 3.6e-270 934.9 682 74.3
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 4.7e-270 934.5 689 75.3
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 8.0e-270 933.7 688 74.6
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 8.0e-270 933.7 682 78.3
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.0e-269 933.3 688 75.0
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 5.2e-269 931.0 668 75.0
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 5.2e-269 931.0 684 77.9
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.5e-268 929.5 747 69.5
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 3.4e-268 928.3 747 69.5
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 4.4e-268 927.9 692 74.3
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 7.5e-268 927.2 667 76.8
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 7.5e-268 927.2 660 78.2
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 1.3e-267 926.4 688 72.5
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 1.3e-267 926.4 651 77.4
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 2.9e-267 925.2 673 74.4
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 8.3e-267 923.7 688 75.1
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 1.1e-266 923.3 673 74.6
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 2.4e-266 922.2 688 75.6
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 7.0e-266 920.6 683 76.0
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 7.0e-266 920.6 684 77.0
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 7.8e-265 917.1 681 76.1
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 3.9e-264 914.8 732 70.9
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 3.9e-264 914.8 690 73.6
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.6e-264 914.1 731 72.4
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 1.1e-263 913.3 668 77.4
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 2.1e-262 909.1 714 71.6
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 4.7e-262 907.9 682 74.3
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.6e-260 902.1 668 74.1
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 2.0e-257 892.5 655 76.9
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 1.9e-255 885.9 684 77.9
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 4.9e-251 871.3 688 72.1
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 6.4e-251 870.9 678 71.8
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 1.1e-250 870.2 663 71.9
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 1.0e-248 863.6 679 68.9
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.1e-247 860.1 684 69.4
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 1.1e-247 860.1 688 70.6
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 1.1e-247 860.1 633 76.1
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.1e-245 853.6 673 71.6
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 5.8e-244 847.8 679 70.7
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.3e-243 846.7 672 70.4
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.2e-243 845.9 735 66.1
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 7.1e-242 840.9 674 70.5
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.6e-241 839.7 674 70.3
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 8.1e-238 827.4 612 77.5
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 8.1e-238 827.4 674 69.1
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 9.0e-237 823.9 723 65.1
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.7e-235 819.7 719 66.3
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 1.7e-235 819.7 681 68.4
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 3.2e-234 815.5 619 73.8
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 7.1e-234 814.3 1038 50.6
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 3.9e-232 808.5 577 76.9
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 2.1e-230 802.7 655 68.4
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.0e-228 796.2 668 66.8
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.4e-226 790.0 694 65.4
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 7.1e-226 787.7 656 67.7
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 2.1e-225 786.2 669 67.3
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 2.7e-225 785.8 662 67.1
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 8.2e-206 721.1 703 63.0
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 9.0e-205 717.6 648 62.3
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 3.8e-203 712.2 555 74.2
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 3.2e-202 709.1 667 60.1
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 6.5e-195 684.9 648 59.1
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 3.0e-192 676.0 649 60.9
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 8.3e-158 561.6 675 51.0
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 4.5e-156 555.8 426 77.2
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 7.8e-148 528.5 402 75.4
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.6e-135 486.9 363 71.9
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 5.4e-125 452.6 308 74.4
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 6.0e-124 449.1 556 51.3
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 3.2e-101 373.6 365 63.8
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 2.0e-79 301.2 503 43.1
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 3.4e-79 300.4 707 33.0
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 9.4e-77 292.4 512 42.8
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.6e-76 290.4 277 61.7
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.9e-46 191.0 185 60.5
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 3.8e-46 190.7 129 74.4
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 2.1e-44 184.9 564 31.9
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.0e-43 182.6 155 67.1
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 2.3e-43 181.4 129 73.6
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 1.7e-38 165.2 778 28.5
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.3e-38 164.9 94 86.2
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 1.9e-32 145.2 621 28.5
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.2e-28 132.5 93 77.4
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 3.3e-21 107.8 672 21.4
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 8.9e-19 99.8 71 74.6
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 1.9e-16 92.0 686 22.6
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 7.8e-15 86.7 105 60.0
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 5.2e-11 73.9 76 53.9
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 1.2e-10 72.8 78 61.5
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.4e-08 65.1 69 52.2
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 3.2e-08 64.7 778 18.0
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 9.3e-08 63.2 47 70.2
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 1.2e-07 62.8 78 57.7


User provided reference genes

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