Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20766 Brassica carinata HOM05D001509 ORTHO05D001361 3.9e-57 224.6 113 100.0
BcaB06g25887 Brassica carinata HOM05D001509 ORTHO05D001361 1.6e-18 96.3 73 67.1
C05p47330 Brassica napus HOM05D001509 ORTHO05D001361 1.6e-18 96.3 73 67.1
A05p31200 Brassica napus HOM05D001509 ORTHO05D001361 3.6e-18 95.1 73 65.8
BraA05t21961Z Brassica rapa HOM05D001509 ORTHO05D001361 3.6e-18 95.1 73 65.8
Thhalv10021135m.g Eutrema salsugineum HOM05D001509 ORTHO05D001361 3.1e-17 92.0 69 65.2
Aa31LG8G5250 Aethionema arabicum HOM05D001509 ORTHO05D001361 4.4e-16 88.2 73 60.3
AL3G31710 Arabidopsis lyrata HOM05D001509 ORTHO05D001361 7.5e-16 87.4 73 63.0
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 1.7e-15 86.3 56 76.8
BcaC05g28629 Brassica carinata HOM05D001509 ORTHO05D001361 1.7e-15 86.3 56 76.8
CARHR093780 Cardamine hirsuta HOM05D001509 ORTHO05D001361 2.2e-15 85.9 60 70.0
Sp3g16530 Schrenkiella parvula HOM05D001509 ORTHO05D001361 6.4e-15 84.3 55 76.4
Cpa.g.sc2.100 Carica papaya HOM05D001509 ORTHO05D001361 1.2e-13 80.1 73 52.1
Sabra10G0071000 Salix brachista HOM05D001509 ORTHO05D001361 2.7e-13 79.0 73 49.3
AT3G18420 Arabidopsis thaliana HOM05D001509 ORTHO05D001361 3.5e-13 78.6 56 71.4
Lalb_Chr07g0188111 Lupinus albus HOM05D001509 ORTHO05D001361 4.6e-13 78.2 73 50.7
Manes.10G063800 Manihot esculenta HOM05D001509 ORTHO05D001361 4.6e-13 78.2 73 50.7
Carub.0003s1820 Capsella rubella HOM05D001509 ORTHO05D001361 7.8e-13 77.4 56 69.6
ClCG01G006980 Citrullus lanatus HOM05D001509 ORTHO05D001361 1.7e-12 76.3 73 50.7
Lalb_Chr12g0209201 Lupinus albus HOM05D001509 ORTHO05D001361 1.7e-12 76.3 73 52.1
Cc11_g03010 Coffea canephora HOM05D001509 ORTHO05D001361 2.3e-12 75.9 71 50.7
Ciclev10005482m.g Citrus clementina HOM05D001509 ORTHO05D001361 3.0e-12 75.5 84 44.0
FAN17G0024 Fragaria x ananassa HOM05D001509 ORTHO05D001361 3.0e-12 75.5 73 49.3
Gohir.A01G144714 Gossypium hirsutum HOM05D001509 ORTHO05D001361 3.0e-12 75.5 75 49.3
Potri.010G098500 Populus trichocarpa HOM05D001509 ORTHO05D001361 3.0e-12 75.5 73 47.9
Sabra08G0108500 Salix brachista HOM05D001509 ORTHO05D001361 3.0e-12 75.5 73 47.9
Sabra08G0108800 Salix brachista HOM05D001509 ORTHO05D001361 3.0e-12 75.5 73 47.9
CsaV3_5G017400 Cucumis sativus L. HOM05D001509 ORTHO05D001361 3.9e-12 75.1 73 47.9
Hma1.2p1_0131F.1_g060590 Hydrangea macrophylla HOM05D001509 ORTHO05D001361 3.9e-12 75.1 73 49.3
RcHm_v2.0_Chr4g0446041 Rosa chinensis HOM05D001509 ORTHO05D001361 3.9e-12 75.1 73 49.3
Peaxi162Scf00097g00171 Petunia axillaris HOM05D001509 ORTHO05D001361 5.0e-12 74.7 73 49.3
Potri.008G143600 Populus trichocarpa HOM05D001509 ORTHO05D001361 5.0e-12 74.7 73 47.9
Haze_01573 Corylus avellana HOM05D001509 ORTHO05D001361 6.6e-12 74.3 73 47.9
Gohir.D01G137800 Gossypium hirsutum HOM05D001509 ORTHO05D001361 6.6e-12 74.3 71 50.7
Gorai.002G168200 Gossypium raimondii HOM05D001509 ORTHO05D001361 6.6e-12 74.3 71 50.7
MELO3C005213.2 Cucumis melo HOM05D001509 ORTHO05D001361 1.1e-11 73.6 73 47.9
CSS0022563 Camellia sinensis var. sinensis HOM05D001509 ORTHO05D001361 1.5e-11 73.2 73 47.9
FAN07G2280 Fragaria x ananassa HOM05D001509 ORTHO05D001361 1.5e-11 73.2 73 47.9
TWI74G0758 Tripterygium wilfordii HOM05D001509 ORTHO05D001361 1.5e-11 73.2 89 41.6
AUR62004327 Chenopodium quinoa HOM05D001509 ORTHO05D001361 1.9e-11 72.8 74 48.6
AUR62033317 Chenopodium quinoa HOM05D001509 ORTHO05D001361 1.9e-11 72.8 74 48.6
AUR62033342 Chenopodium quinoa HOM05D001509 ORTHO05D001361 1.9e-11 72.8 74 48.6
Ca_18214_v3 Cicer arietinum L. HOM05D001509 ORTHO05D001361 1.9e-11 72.8 73 47.9
Duzib251G0395 Durio zibethinus HOM05D001509 ORTHO05D001361 2.5e-11 72.4 73 45.2
Duzib268G0867 Durio zibethinus HOM05D001509 ORTHO05D001361 2.5e-11 72.4 75 45.3
Sed0007976 Sechium edule HOM05D001509 ORTHO05D001361 2.5e-11 72.4 75 48.0
THA.LOC104820397 Tarenaya hassleriana HOM05D001509 ORTHO05D001361 2.5e-11 72.4 64 51.6
Dinv06213 Davidia involucrata HOM05D001509 ORTHO05D001361 3.3e-11 72.0 73 46.6
Lj3P854T32 Lonicera japonica HOM05D001509 ORTHO05D001361 3.3e-11 72.0 73 45.2
Potri.008G142980 Populus trichocarpa HOM05D001509 ORTHO05D001361 3.3e-11 72.0 73 45.2
Lj4g0008841 Lotus japonicus HOM05D001509 ORTHO05D001361 4.3e-11 71.6 73 46.6
Solyc01g008160.4 Solanum lycopersicum HOM05D001509 ORTHO05D001361 4.3e-11 71.6 73 45.2
Sopen01g003700 Solanum pennellii HOM05D001509 ORTHO05D001361 4.3e-11 71.6 73 45.2
PGSC0003DMG400036477 Solanum tuberosum HOM05D001509 ORTHO05D001361 4.3e-11 71.6 73 45.2
FvH4_4g36260 Fragaria vesca HOM05D001509 ORTHO05D001361 5.6e-11 71.2 73 49.3
CAN.G282.79 Capsicum annuum HOM05D001509 ORTHO05D001361 7.3e-11 70.9 73 46.6
FAN12G3066 Fragaria x ananassa HOM05D001509 ORTHO05D001361 7.3e-11 70.9 73 46.6
CANSAT78G1784 Cannabis sativa HOM05D001509 ORTHO05D001361 9.5e-11 70.5 69 47.8
TAR622G0161 Trochodendron aralioides HOM05D001509 ORTHO05D001361 9.5e-11 70.5 73 47.9
Atru.chr11.1053 Acer truncatum HOM05D001509 ORTHO05D001361 1.2e-10 70.1 69 46.4
MSTRG.9954 Avicennia marina HOM05D001509 ORTHO05D001361 1.2e-10 70.1 73 45.2
Eucgr.B02617 Eucalyptus grandis HOM05D001509 ORTHO05D001361 1.2e-10 70.1 64 51.6
Sc23g0003050 Simmondsia chinensis HOM05D001509 ORTHO05D001361 2.1e-10 69.3 67 52.2
Glyma.05G135200 Glycine max HOM05D001509 ORTHO05D001361 6.2e-10 67.8 73 45.2
Psat7g086600 Pisum sativum HOM05D001509 ORTHO05D001361 8.1e-10 67.4 73 47.9
TPR.G34754 Trifolium pratense HOM05D001509 ORTHO05D001361 8.1e-10 67.4 73 47.9
C01p45760 Brassica napus HOM05D001509 ORTHO05D001361 1.1e-09 67.0 64 60.9
Nitab4.5_0007743g0040 Nicotiana tabacum HOM05D001509 ORTHO05D001361 1.1e-09 67.0 57 52.6
BcaC09g48803 Brassica carinata HOM05D001509 ORTHO05D001361 1.8e-09 66.2 61 60.7
CiPaw.05G162900 Carya illinoinensis HOM05D001509 ORTHO05D001361 1.8e-09 66.2 55 56.4
Lsat_1_v5_gn_3_27620 Lactuca sativa HOM05D001509 ORTHO05D001361 2.3e-09 65.9 84 45.2
Nitab4.5_0000069g0610 Nicotiana tabacum HOM05D001509 ORTHO05D001361 3.1e-09 65.5 56 53.6
Dinv28143 Davidia involucrata HOM05D001509 ORTHO05D001361 5.2e-09 64.7 53 54.7
SalBow2G0515 Salvia bowleyana HOM05D001509 ORTHO05D001361 5.2e-09 64.7 98 37.8
QL03p041857 Quercus lobata HOM05D001509 ORTHO05D001361 8.9e-09 63.9 57 50.9
CDE08G1311 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 2.0e-08 62.8 55 52.7
FvH4_4g36290 Fragaria vesca HOM05D001509 ORTHO05D001361 2.0e-08 62.8 55 52.7
CDE04G1757 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 2.6e-08 62.4 53 56.6
MD16G1008500 Malus domestica HOM05D001509 ORTHO05D001361 2.6e-08 62.4 53 52.8
MBI06_g12319_MAGBIO Magnolia biondii HOM05D001509 ORTHO05D001361 3.4e-08 62.0 53 50.9
Cfa015097 Carpinus fangiana HOM05D001509 ORTHO05D001361 4.4e-08 61.6 53 52.8
DCAR_026849 Daucus carota HOM05D001509 ORTHO05D001361 4.4e-08 61.6 69 43.5
Ah.05g176610 Amaranthus hybridus HOM05D001509 ORTHO05D001361 7.5e-08 60.8 57 52.6
Prupe.1G342400 Prunus persica HOM05D001509 ORTHO05D001361 7.5e-08 60.8 53 50.9
Rhsim06G0167700 Rhododendron simsii HOM05D001509 ORTHO05D001361 7.5e-08 60.8 67 43.3
Thecc.02G296300 Theobroma cacao HOM05D001509 ORTHO05D001361 9.9e-08 60.5 51 52.9
HanXRQChr14g0446911 Helianthus annuus HOM05D001509 ORTHO05D001361 1.3e-07 60.1 69 43.5
HanXRQChr17g0539551 Helianthus annuus HOM05D001509 ORTHO05D001361 2.9e-07 58.9 48 56.2
MD13G1010600 Malus domestica HOM05D001509 ORTHO05D001361 2.9e-07 58.9 52 50.0
VMungo0251G2173 Vigna mungo HOM05D001509 ORTHO05D001361 3.7e-07 58.5 53 52.8
HPP92_025615 Vanilla planifolia HOM05D001509 ORTHO05D001361 6.4e-07 57.8 69 39.1
ECA246G4900 Erigeron canadensis HOM05D001509 ORTHO05D001361 1.1e-06 57.0 48 56.2
Aqoxy3G04205 Aquilegia oxysepala HOM05D001509 ORTHO05D001361 1.4e-06 56.6 69 44.9
arahy.Tifrunner.gnm1.ann1.P8J958 Arachis hypogaea HOM05D001509 ORTHO05D001361 3.2e-06 55.5 44 61.4
arahy.Tifrunner.gnm1.ann1.RLS6BD Arachis hypogaea HOM05D001509 ORTHO05D001361 3.2e-06 55.5 44 61.4
HanXRQChr05g0141211 Helianthus annuus HOM05D001509 ORTHO05D001361 9.2e-06 53.9 59 47.5
unitig_899.g14875 Utricularia gibba HOM05D001509 ORTHO05D001361 9.2e-06 53.9 49 49.0


User provided reference genes

Program Settings