Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 2.1e-51 205.3 94 100.0
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 6.9e-47 190.3 96 90.6
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 6.9e-47 190.3 96 90.6
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-45 185.7 94 88.3
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-45 185.7 94 88.3
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 1.7e-45 185.7 94 88.3
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 4.9e-45 184.1 94 86.2
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 6.4e-45 183.7 95 88.4
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 8.4e-45 183.3 95 87.4
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 8.4e-45 183.3 95 87.4
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 2.4e-44 181.8 95 87.4
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 2.4e-44 181.8 95 87.4
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 6.2e-40 167.2 94 80.9
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 6.2e-40 167.2 94 80.9
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.8e-39 165.6 96 81.2
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 2.4e-39 165.2 94 79.8
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 2.4e-39 165.2 94 79.8
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 5.8e-38 160.6 95 77.9
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 6.4e-37 157.1 94 77.7
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 6.4e-37 157.1 94 77.7
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 6.4e-37 157.1 94 77.7
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 5.0e-13 77.8 80 50.0
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 8.5e-13 77.0 79 48.1
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 4.2e-12 74.7 75 53.3
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 9.4e-12 73.6 75 50.7
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.6e-11 72.8 74 45.9
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.6e-11 72.8 81 48.1
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 2.1e-11 72.4 35 88.6
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.6e-11 71.6 74 45.9
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.6e-11 71.6 74 45.9
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.9e-11 70.5 75 50.7
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.4e-10 69.7 75 50.7
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.4e-10 69.7 75 50.7
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.8e-10 69.3 73 46.6
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.3e-10 68.9 75 46.7
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.0e-10 68.6 75 49.3
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.0e-10 68.6 75 49.3
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.0e-10 68.6 75 49.3
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.9e-10 68.2 71 47.9
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 3.9e-10 68.2 76 48.7
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 5.1e-10 67.8 79 43.0
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 8.8e-10 67.0 75 46.7
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 1.1e-09 66.6 78 48.7
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.1e-09 66.6 78 48.7
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.5e-09 66.2 81 46.9
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.0e-09 65.9 78 47.4
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.0e-09 65.9 75 44.0
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 2.5e-09 65.5 71 42.3
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 2.5e-09 65.5 73 45.2
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.5e-09 65.5 78 47.4
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 4.3e-09 64.7 87 39.1
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 4.3e-09 64.7 87 39.1
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 5.7e-09 64.3 81 43.2
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 5.7e-09 64.3 72 45.8
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 9.7e-09 63.5 40 70.0
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 1.3e-08 63.2 41 65.9
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 1.3e-08 63.2 41 65.9
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.2e-08 62.4 69 50.7
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-08 62.4 69 50.7
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 2.2e-08 62.4 69 50.7
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 2.2e-08 62.4 69 50.7
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 2.2e-08 62.4 69 50.7
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 2.2e-08 62.4 69 50.7
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 2.2e-08 62.4 65 41.5
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.2e-08 62.4 34 76.5
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 2.2e-08 62.4 74 41.9
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 2.2e-08 62.4 74 43.2
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.2e-08 62.4 77 44.2
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 2.2e-08 62.4 76 44.7
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 2.8e-08 62.0 69 50.7
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 2.8e-08 62.0 64 42.2
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 2.8e-08 62.0 64 42.2
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 2.8e-08 62.0 64 42.2
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 3.7e-08 61.6 78 41.0
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 4.8e-08 61.2 90 36.7
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 6.3e-08 60.8 56 55.4
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 6.3e-08 60.8 69 52.2
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 8.2e-08 60.5 90 40.0
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 8.2e-08 60.5 78 41.0
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.4e-07 59.7 77 42.9
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 2.4e-07 58.9 55 49.1
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 2.4e-07 58.9 63 47.6
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 3.1e-07 58.5 63 47.6
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 3.1e-07 58.5 70 38.6
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 4.1e-07 58.2 56 51.8
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 4.1e-07 58.2 76 39.5
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 5.3e-07 57.8 73 45.2
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 5.3e-07 57.8 90 35.6
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 6.9e-07 57.4 75 38.7
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 9.1e-07 57.0 75 41.3
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-06 56.6 27 85.2
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-06 56.6 27 85.2
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 1.2e-06 56.6 27 85.2
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 1.2e-06 56.6 92 39.1
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 1.5e-06 56.2 75 42.7
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 2.0e-06 55.8 66 42.4
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 2.6e-06 55.5 25 88.0
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 4.5e-06 54.7 25 88.0
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 4.5e-06 54.7 34 64.7
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 4.5e-06 54.7 63 42.9
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 4.5e-06 54.7 65 43.1
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 4.5e-06 54.7 66 43.9
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 5.9e-06 54.3 36 63.9
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 5.9e-06 54.3 36 63.9
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 5.9e-06 54.3 36 63.9
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 5.9e-06 54.3 29 75.9
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 5.9e-06 54.3 80 42.5
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 7.7e-06 53.9 78 37.2


User provided reference genes

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