Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 2.9e-60 235.0 111 100.0
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 1.9e-51 205.7 111 87.4
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 4.3e-48 194.5 111 81.1
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 8.1e-47 190.3 111 80.2
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 8.1e-47 190.3 111 80.2
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 1.4e-46 189.5 111 77.5
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 3.1e-46 188.3 111 79.3
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 4.0e-46 188.0 111 76.6
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 4.0e-46 188.0 111 76.6
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 9.0e-46 186.8 111 78.4
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 9.0e-46 186.8 111 76.6
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 9.0e-46 186.8 111 78.4
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 9.0e-46 186.8 111 76.6
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 1.5e-45 186.0 112 78.6
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.4e-45 184.5 114 78.1
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 9.9e-45 183.3 111 73.0
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 1.3e-44 183.0 97 86.6
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.9e-40 169.1 107 74.8
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.5e-37 159.5 110 70.9
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 5.4e-35 151.0 109 68.8
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 2.7e-26 122.1 67 82.1
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 4.3e-24 114.8 73 72.6
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.4e-19 99.8 114 45.6
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 7.1e-19 97.4 109 46.8
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.2e-18 96.7 109 47.7
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 1.6e-18 96.3 108 45.4
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 2.7e-18 95.5 114 47.4
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 3.5e-18 95.1 110 47.3
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.3e-17 93.2 105 45.7
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 1.1e-16 90.1 82 53.7
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 1.5e-16 89.7 104 45.2
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 1.9e-16 89.4 112 44.6
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 3.3e-16 88.6 113 41.6
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 4.3e-16 88.2 119 44.5
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 4.3e-16 88.2 106 48.1
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 1.3e-15 86.7 112 44.6
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 1.6e-15 86.3 111 45.0
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.6e-15 86.3 111 45.0
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 6.3e-15 84.3 42 78.6
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 6.3e-15 84.3 107 42.1
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.1e-14 83.6 111 43.2
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.4e-14 83.2 52 65.4
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.4e-14 83.2 52 65.4
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 1.4e-14 83.2 51 68.6
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 1.8e-14 82.8 132 41.7
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 2.4e-14 82.4 92 47.8
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 2.4e-14 82.4 107 45.8
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 2.4e-14 82.4 112 42.9
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 3.1e-14 82.0 48 70.8
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 5.3e-14 81.3 56 64.3
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 5.3e-14 81.3 135 42.2
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 5.3e-14 81.3 69 52.2
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 5.3e-14 81.3 58 63.8
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 6.9e-14 80.9 107 40.2
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 6.9e-14 80.9 107 40.2
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 6.9e-14 80.9 108 42.6
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 9.0e-14 80.5 53 66.0
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 9.0e-14 80.5 107 41.1
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 1.2e-13 80.1 100 43.0
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 1.2e-13 80.1 104 42.3
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 2.0e-13 79.3 101 48.5
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 2.6e-13 79.0 109 44.0
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 3.4e-13 78.6 55 58.2
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 3.4e-13 78.6 48 66.7
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 4.5e-13 78.2 102 40.2
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 5.9e-13 77.8 66 51.5
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 7.6e-13 77.4 42 76.2
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 7.6e-13 77.4 48 64.6
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 1.0e-12 77.0 47 66.0
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.0e-12 77.0 47 66.0
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.3e-12 76.6 51 62.7
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 1.3e-12 76.6 95 38.9
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 1.7e-12 76.3 104 42.3
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 2.9e-12 75.5 118 38.1
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 2.9e-12 75.5 50 60.0
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 2.9e-12 75.5 51 58.8
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 2.9e-12 75.5 102 41.2
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 5.0e-12 74.7 104 40.4
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 5.0e-12 74.7 60 50.0
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 6.5e-12 74.3 45 68.9
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 8.5e-12 73.9 48 60.4
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.1e-11 73.6 104 39.4
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.1e-11 73.6 109 42.2
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.9e-11 72.8 110 42.7
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 1.9e-11 72.8 77 46.8
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 1.9e-11 72.8 87 47.1
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 2.5e-11 72.4 102 41.2
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 4.2e-11 71.6 105 40.0
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 5.5e-11 71.2 66 48.5
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 5.5e-11 71.2 106 37.7
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 7.2e-11 70.9 105 36.2
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 7.2e-11 70.9 115 40.0
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 9.4e-11 70.5 47 63.8
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 9.4e-11 70.5 50 56.0
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 9.4e-11 70.5 112 40.2
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 9.4e-11 70.5 108 35.2
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 9.4e-11 70.5 50 58.0
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 9.4e-11 70.5 59 59.3
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 9.4e-11 70.5 47 63.8
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 1.2e-10 70.1 50 62.0
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 1.6e-10 69.7 115 39.1
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.6e-10 69.7 119 40.3
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 1.6e-10 69.7 81 49.4
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 3.6e-10 68.6 110 40.0
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 4.6e-10 68.2 43 60.5
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 4.6e-10 68.2 48 62.5
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 1.0e-09 67.0 54 51.9
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.3e-09 65.9 49 53.1
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 3.0e-09 65.5 47 59.6
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 5.1e-09 64.7 107 39.3
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 5.1e-09 64.7 40 62.5
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 1.5e-08 63.2 42 61.9
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.5e-08 63.2 81 37.0
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 1.5e-08 63.2 57 50.9
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 3.3e-08 62.0 107 33.6
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 3.3e-08 62.0 85 38.8
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 9.7e-08 60.5 43 60.5
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 1.7e-07 59.7 107 33.6
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 3.7e-07 58.5 37 64.9
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 4.8e-07 58.2 97 35.1
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 4.8e-07 58.2 36 61.1
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 8.2e-07 57.4 39 56.4
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.1e-06 57.0 39 53.8
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 1.8e-06 56.2 45 51.1
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 5.3e-06 54.7 39 53.8
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 5.3e-06 54.7 110 36.4
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 6.9e-06 54.3 48 50.0


User provided reference genes

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