Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 4.5e-61 237.7 112 100.0
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 1.2e-50 203.0 108 87.0
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 6.0e-50 200.7 111 83.8
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 6.0e-50 200.7 111 83.8
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 7.9e-50 200.3 111 83.8
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 7.9e-50 200.3 111 83.8
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 7.9e-50 200.3 112 83.9
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 1.0e-49 199.9 111 82.9
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 3.0e-49 198.4 111 82.0
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 3.0e-49 198.4 111 82.9
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 3.0e-49 198.4 111 82.0
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 3.9e-49 198.0 111 80.2
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 6.7e-49 197.2 111 82.0
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 6.7e-49 197.2 111 82.0
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 6.7e-49 197.2 114 83.3
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 2.8e-47 191.8 111 81.1
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 2.0e-45 185.7 97 87.6
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 3.6e-42 174.9 110 75.5
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.3e-39 166.4 113 73.5
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 2.0e-37 159.1 110 71.8
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 7.7e-29 130.6 67 86.6
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 1.6e-26 122.9 76 73.7
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.9e-20 102.1 109 46.8
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 8.5e-20 100.5 85 61.2
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.1e-19 100.1 109 45.9
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 5.5e-19 97.8 110 47.3
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 9.4e-19 97.1 109 45.0
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 3.6e-18 95.1 108 44.4
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 1.4e-17 93.2 109 45.0
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 5.2e-17 91.3 105 43.8
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 8.8e-17 90.5 63 60.3
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 1.5e-16 89.7 104 44.2
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.5e-16 89.7 122 47.5
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 4.4e-16 88.2 110 45.5
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 5.7e-16 87.8 121 45.5
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 7.5e-16 87.4 60 61.7
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 7.5e-16 87.4 60 61.7
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 1.3e-15 86.7 110 38.2
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.7e-15 86.3 105 44.8
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 2.2e-15 85.9 108 44.4
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 2.2e-15 85.9 68 55.9
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 2.2e-15 85.9 68 55.9
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 2.8e-15 85.5 103 44.7
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 2.8e-15 85.5 107 41.1
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 3.7e-15 85.1 56 62.5
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 3.7e-15 85.1 107 40.2
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 3.7e-15 85.1 111 40.5
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 6.3e-15 84.3 105 41.0
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 6.3e-15 84.3 57 64.9
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.4e-14 82.4 105 41.9
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 3.1e-14 82.0 108 40.7
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 4.1e-14 81.6 102 41.2
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 5.3e-14 81.3 111 43.2
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 5.3e-14 81.3 119 42.0
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 5.3e-14 81.3 101 41.6
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 7.0e-14 80.9 45 71.1
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 9.1e-14 80.5 110 46.4
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 9.1e-14 80.5 105 44.8
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 9.1e-14 80.5 95 41.1
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 9.1e-14 80.5 61 57.4
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 1.2e-13 80.1 113 38.9
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.6e-13 79.7 121 42.1
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 2.0e-13 79.3 107 41.1
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 2.0e-13 79.3 107 43.9
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 2.7e-13 79.0 109 42.2
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 4.5e-13 78.2 107 37.4
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 4.5e-13 78.2 95 37.9
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 5.9e-13 77.8 93 44.1
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 5.9e-13 77.8 107 38.3
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 5.9e-13 77.8 107 38.3
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.0e-12 77.0 108 42.6
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 1.0e-12 77.0 55 58.2
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 1.0e-12 77.0 94 44.7
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 1.0e-12 77.0 44 63.6
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 1.0e-12 77.0 48 60.4
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 1.3e-12 76.6 107 39.3
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 1.3e-12 76.6 70 51.4
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 1.7e-12 76.3 102 40.2
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.2e-12 75.9 110 43.6
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 2.9e-12 75.5 50 58.0
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.8e-12 75.1 119 39.5
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 5.0e-12 74.7 108 41.7
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 5.0e-12 74.7 110 42.7
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 5.0e-12 74.7 102 39.2
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 5.0e-12 74.7 107 38.3
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 5.0e-12 74.7 115 41.7
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 6.5e-12 74.3 115 39.1
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 6.5e-12 74.3 47 59.6
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 8.5e-12 73.9 120 38.3
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.1e-11 73.6 48 68.8
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.1e-11 73.6 102 39.2
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.5e-11 73.2 47 59.6
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 1.9e-11 72.8 48 64.6
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 2.5e-11 72.4 103 38.8
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 2.5e-11 72.4 108 37.0
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 4.2e-11 71.6 110 40.9
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 4.2e-11 71.6 49 63.3
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 5.5e-11 71.2 104 37.5
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 7.2e-11 70.9 85 40.0
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 7.2e-11 70.9 50 54.0
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 1.2e-10 70.1 50 60.0
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.7e-10 68.9 66 47.0
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 2.7e-10 68.9 49 61.2
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 2.7e-10 68.9 47 59.6
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 3.6e-10 68.6 50 56.0
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 6.1e-10 67.8 47 59.6
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 1.4e-09 66.6 42 64.3
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 2.3e-09 65.9 109 36.7
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 3.0e-09 65.5 54 51.9
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 3.0e-09 65.5 42 61.9
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 6.8e-09 64.3 47 55.3
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 6.8e-09 64.3 42 61.9
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 8.8e-09 63.9 41 63.4
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 8.8e-09 63.9 107 38.3
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 1.2e-08 63.5 104 36.5
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 4.4e-08 61.6 39 61.5
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 4.4e-08 61.6 64 48.4
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 1.3e-07 60.1 103 36.9
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 1.3e-07 60.1 46 54.3
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 2.8e-07 58.9 94 36.2
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 2.8e-07 58.9 37 64.9
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 4.8e-07 58.2 36 61.1
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 1.4e-06 56.6 94 33.0
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 1.8e-06 56.2 44 56.8
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 3.1e-06 55.5 42 52.4
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 3.1e-06 55.5 36 58.3
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 5.4e-06 54.7 37 59.5


User provided reference genes

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