Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 4.9e-51 204.1 100 100.0
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 5.2e-45 184.1 101 92.1
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 5.2e-45 184.1 101 92.1
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 5.2e-45 184.1 101 92.1
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 4.6e-41 171.0 101 86.1
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 4.6e-41 171.0 101 86.1
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 1.4e-37 159.5 100 78.0
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 7.8e-33 143.7 92 77.2
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 2.3e-32 142.1 92 76.1
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 2.3e-32 142.1 100 76.0
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 3.9e-32 141.4 92 78.3
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 8.7e-32 140.2 100 76.0
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 1.1e-31 139.8 104 73.1
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 4.8e-30 134.4 100 72.0
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 4.8e-30 134.4 100 72.0
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 2.0e-28 129.0 101 70.3
BcaB04g19054 Brassica carinata HOM05D007107 ORTHO05D009198 5.1e-24 114.4 95 68.4
C05p45210 Brassica napus HOM05D007107 ORTHO05D009198 5.1e-24 114.4 89 66.3
BcaB06g26031 Brassica carinata HOM05D007107 ORTHO05D009198 1.4e-21 106.3 97 62.9
THA.LOC104826494 Tarenaya hassleriana HOM05D007107 ORTHO05D009198 8.7e-16 87.0 99 50.5
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.3e-14 83.2 86 57.0
BcaC05g28441 Brassica carinata HOM05D007107 ORTHO05D009198 2.1e-14 82.4 67 64.2
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.8e-13 79.3 86 55.8
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 1.8e-13 79.3 86 55.8
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 2.6e-12 75.5 75 57.3
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 7.6e-12 73.9 86 51.2
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 7.6e-12 73.9 72 58.3
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 1.0e-11 73.6 89 51.7
Aa31LG8G6390 Aethionema arabicum HOM05D007107 ORTHO05D009198 2.2e-11 72.4 80 51.2
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 3.8e-11 71.6 62 66.1
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 1.1e-10 70.1 72 55.6
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 1.1e-10 70.1 71 52.1
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 1.4e-10 69.7 87 51.7
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 2.5e-10 68.9 77 55.8
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 2.5e-10 68.9 73 49.3
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 3.2e-10 68.6 72 51.4
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 4.2e-10 68.2 73 49.3
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 7.1e-10 67.4 86 52.3
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 7.1e-10 67.4 86 52.3
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 7.1e-10 67.4 72 51.4
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 1.2e-09 66.6 91 47.3
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 1.6e-09 66.2 74 54.1
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 2.1e-09 65.9 64 57.8
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 2.1e-09 65.9 76 52.6
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 2.1e-09 65.9 70 52.9
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 2.7e-09 65.5 72 50.0
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 2.7e-09 65.5 72 50.0
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 2.7e-09 65.5 72 50.0
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 2.7e-09 65.5 74 50.0
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 2.7e-09 65.5 74 50.0
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 3.5e-09 65.1 86 51.2
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 3.5e-09 65.1 70 51.4
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 3.5e-09 65.1 60 60.0
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 4.6e-09 64.7 97 45.4
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 4.6e-09 64.7 64 53.1
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 4.6e-09 64.7 95 45.3
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 6.0e-09 64.3 89 47.2
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 6.0e-09 64.3 74 52.7
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 6.0e-09 64.3 64 53.1
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 6.0e-09 64.3 72 48.6
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 1.3e-08 63.2 67 49.3
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 1.3e-08 63.2 75 52.0
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 1.3e-08 63.2 73 49.3
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 1.8e-08 62.8 64 57.8
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 1.8e-08 62.8 64 57.8
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 3.9e-08 61.6 64 54.7
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 5.1e-08 61.2 73 52.1
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 5.1e-08 61.2 93 44.1
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 6.7e-08 60.8 72 52.8
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 8.7e-08 60.5 72 52.8
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 1.9e-07 59.3 64 56.2
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 2.5e-07 58.9 93 41.9
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 2.5e-07 58.9 64 51.6
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 3.3e-07 58.5 86 40.7
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 4.3e-07 58.2 92 44.6
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 5.7e-07 57.8 72 50.0
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 5.7e-07 57.8 76 47.4
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 7.4e-07 57.4 67 47.8
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 1.3e-06 56.6 61 49.2
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 1.3e-06 56.6 77 45.5
CANSAT25G2317 Cannabis sativa HOM05D007107 ORTHO05D009198 1.6e-06 56.2 75 44.0
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 1.6e-06 56.2 87 36.8
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 2.8e-06 55.5 69 49.3
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 6.2e-06 54.3 62 48.4
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 8.2e-06 53.9 63 54.0


User provided reference genes

Program Settings