Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 7.7e-189 663.7 342 100.0
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 7.5e-160 567.4 345 88.1
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 4.9e-159 564.7 345 88.1
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 2.4e-158 562.4 346 87.9
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 5.0e-156 554.7 343 86.6
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 5.0e-156 554.7 343 86.6
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 3.9e-148 528.5 347 82.7
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 9.2e-142 507.3 347 80.1
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 5.8e-136 488.0 345 76.5
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 7.1e-134 481.1 345 75.9
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 2.1e-133 479.6 347 76.1
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 7.8e-125 451.1 347 72.9
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 1.5e-115 420.2 346 68.8
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 3.4e-104 382.5 350 64.0
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 1.3e-98 364.0 351 60.4
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 1.3e-98 364.0 351 60.7
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 1.2e-93 347.4 348 58.6
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 5.1e-92 342.0 348 57.5
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 6.7e-92 341.7 343 56.9
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 1.9e-91 340.1 350 56.0
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 4.3e-91 339.0 350 56.0
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 1.7e-90 337.0 343 57.7
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 3.7e-90 335.9 286 64.0
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 3.1e-89 332.8 349 58.2
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 3.1e-89 332.8 344 56.7
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 4.1e-89 332.4 344 56.7
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 1.5e-88 330.5 344 56.1
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 1.5e-88 330.5 344 56.1
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 3.4e-88 329.3 348 56.3
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 7.7e-88 328.2 278 65.1
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 2.9e-87 326.2 342 56.1
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 8.5e-87 324.7 348 55.5
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 1.1e-86 324.3 348 55.2
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 3.2e-86 322.8 353 54.4
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 5.5e-86 322.0 352 54.3
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 9.4e-86 321.2 350 55.4
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 9.4e-86 321.2 349 55.6
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 9.4e-86 321.2 348 56.0
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 1.2e-85 320.9 346 55.5
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 1.2e-85 320.9 352 56.5
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 2.1e-85 320.1 342 55.8
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 2.7e-85 319.7 337 56.1
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 3.6e-85 319.3 315 59.7
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 4.7e-85 318.9 326 55.8
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 7.9e-85 318.2 351 54.1
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 1.4e-84 317.4 349 55.3
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 1.8e-84 317.0 351 53.6
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 1.8e-84 317.0 351 53.6
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 1.8e-84 317.0 344 54.7
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 1.8e-84 317.0 346 52.0
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 3.9e-84 315.8 307 59.0
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 5.1e-84 315.5 348 54.9
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 6.7e-84 315.1 349 54.2
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 8.8e-84 314.7 347 54.2
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 1.5e-83 313.9 334 55.4
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 2.0e-83 313.5 294 61.2
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 1.7e-82 310.5 349 53.6
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 2.8e-82 309.7 309 55.7
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 1.1e-81 307.8 359 50.7
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 1.8e-81 307.0 278 61.2
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 5.3e-81 305.4 349 52.7
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 5.3e-81 305.4 351 52.4
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 5.3e-81 305.4 344 53.2
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 6.9e-81 305.1 353 52.1
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 9.1e-81 304.7 344 54.1
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 3.4e-80 302.8 344 53.2
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 3.4e-80 302.8 358 51.7
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 1.3e-79 300.8 283 58.7
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 1.3e-79 300.8 348 51.4
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 1.7e-79 300.4 353 53.3
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 8.5e-79 298.1 349 53.0
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 1.4e-78 297.4 349 53.0
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 9.4e-78 294.7 350 51.4
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 9.4e-78 294.7 350 52.0
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 2.1e-77 293.5 357 48.2
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 1.0e-76 291.2 279 54.8
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 1.0e-76 291.2 281 58.7
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 1.5e-75 287.3 343 51.9
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 3.3e-75 286.2 341 51.9
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 7.4e-75 285.0 355 50.1
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 1.7e-74 283.9 347 49.6
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 6.3e-74 282.0 328 51.8
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 8.2e-74 281.6 341 51.3
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 5.3e-73 278.9 343 49.6
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 1.1e-70 271.2 285 54.4
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 3.7e-66 256.1 278 53.6
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 2.5e-62 243.4 333 45.9
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 2.6e-59 233.4 285 51.6
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 1.1e-57 228.0 260 56.9
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 1.8e-57 227.3 289 45.7
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 1.0e-55 221.5 282 44.0
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 8.6e-55 218.4 132 87.1
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 9.5e-54 214.9 208 58.7
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 2.8e-50 203.4 239 57.3
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 5.8e-43 179.1 135 66.7
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 6.0e-40 169.1 270 36.7
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 7.3e-38 162.2 187 49.7
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 4.9e-34 149.4 165 53.3
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 1.9e-33 147.5 105 73.3
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 2.7e-32 143.7 123 61.8
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 6.4e-26 122.5 270 33.7
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 1.7e-23 114.4 277 32.9
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 1.8e-20 104.4 117 51.3
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 3.8e-18 96.7 314 26.4
MCO11G003 Micromonas commoda HOM05D007317 ORTHO05D009299 4.6e-16 89.7 282 27.7
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 1.9e-14 84.3 106 48.1
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 2.9e-10 70.5 303 27.1


User provided reference genes

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