Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20621 Brassica carinata HOM05D002491 ORTHO05D002651 2.9e-38 161.4 80 100.0
BcaC05g28202 Brassica carinata HOM05D002491 ORTHO05D002651 3.5e-15 84.7 67 65.7
A05p27820 Brassica napus HOM05D002491 ORTHO05D002651 3.5e-15 84.7 67 65.7
C05p43160 Brassica napus HOM05D002491 ORTHO05D002651 3.5e-15 84.7 67 65.7
BolC5t33046H Brassica oleracea HOM05D002491 ORTHO05D002651 3.5e-15 84.7 67 65.7
Carub.0003s2087 Capsella rubella HOM05D002491 ORTHO05D002651 2.2e-14 82.0 67 65.7
BraA03t13348Z Brassica rapa HOM05D002491 ORTHO05D002651 5.0e-14 80.9 67 62.7
AL3G34850 Arabidopsis lyrata HOM05D002491 ORTHO05D002651 6.5e-14 80.5 67 64.2
BcaC01g03536 Brassica carinata HOM05D002491 ORTHO05D002651 6.5e-14 80.5 67 62.7
A03p41940 Brassica napus HOM05D002491 ORTHO05D002651 6.5e-14 80.5 67 62.7
C03p51340 Brassica napus HOM05D002491 ORTHO05D002651 6.5e-14 80.5 67 62.7
BolC3t17421H Brassica oleracea HOM05D002491 ORTHO05D002651 6.5e-14 80.5 67 62.7
AT3G20890 Arabidopsis thaliana HOM05D002491 ORTHO05D002651 1.5e-13 79.3 67 65.7
THA.LOC104817908 Tarenaya hassleriana HOM05D002491 ORTHO05D002651 1.9e-13 79.0 67 64.2
BcaB04g19132 Brassica carinata HOM05D002491 ORTHO05D002651 2.5e-13 78.6 67 62.7
Thhalv10021270m.g Eutrema salsugineum HOM05D002491 ORTHO05D002651 4.2e-13 77.8 67 62.7
CARHR096770 Cardamine hirsuta HOM05D002491 ORTHO05D002651 9.4e-13 76.6 67 62.7
Aa31LG8G7710 Aethionema arabicum HOM05D002491 ORTHO05D002651 3.6e-12 74.7 69 62.3
Manes.14G002900 Manihot esculenta HOM05D002491 ORTHO05D002651 2.3e-11 72.0 67 59.7
FAN16G3166 Fragaria x ananassa HOM05D002491 ORTHO05D002651 3.0e-11 71.6 67 59.7
Atru.chr3.2714 Acer truncatum HOM05D002491 ORTHO05D002651 4.0e-11 71.2 67 56.7
Dinv36257 Davidia involucrata HOM05D002491 ORTHO05D002651 4.0e-11 71.2 67 58.2
ClCG02G023210 Citrullus lanatus HOM05D002491 ORTHO05D002651 5.2e-11 70.9 68 54.4
Ciclev10016322m.g Citrus clementina HOM05D002491 ORTHO05D002651 5.2e-11 70.9 67 58.2
MELO3C014592.2 Cucumis melo HOM05D002491 ORTHO05D002651 5.2e-11 70.9 68 54.4
CsaV3_4G024280 Cucumis sativus L. HOM05D002491 ORTHO05D002651 5.2e-11 70.9 68 54.4
MBI04_g36070_MAGBIO Magnolia biondii HOM05D002491 ORTHO05D002651 5.2e-11 70.9 67 58.2
GSVIVG01025256001 Vitis vinifera HOM05D002491 ORTHO05D002651 5.2e-11 70.9 67 59.7
FvH4_3g28820 Fragaria vesca HOM05D002491 ORTHO05D002651 6.7e-11 70.5 67 58.2
FAN11G3793 Fragaria x ananassa HOM05D002491 ORTHO05D002651 6.7e-11 70.5 67 58.2
FAN25G3525 Fragaria x ananassa HOM05D002491 ORTHO05D002651 6.7e-11 70.5 67 58.2
RcHm_v2.0_Chr5g0052191 Rosa chinensis HOM05D002491 ORTHO05D002651 6.7e-11 70.5 67 58.2
Sabra09G0038700 Salix brachista HOM05D002491 ORTHO05D002651 6.7e-11 70.5 67 58.2
Sabra16G0157700 Salix brachista HOM05D002491 ORTHO05D002651 6.7e-11 70.5 67 58.2
Manes.06G164100 Manihot esculenta HOM05D002491 ORTHO05D002651 8.8e-11 70.1 67 56.7
Rhsim13G0221000 Rhododendron simsii HOM05D002491 ORTHO05D002651 8.8e-11 70.1 67 55.2
Actinidia06908 Actinidia chinensis HOM05D002491 ORTHO05D002651 1.1e-10 69.7 67 62.7
CSS0026152 Camellia sinensis var. sinensis HOM05D002491 ORTHO05D002651 1.1e-10 69.7 87 50.6
DCAR_002073 Daucus carota HOM05D002491 ORTHO05D002651 1.1e-10 69.7 74 51.4
FAN16G1386 Fragaria x ananassa HOM05D002491 ORTHO05D002651 1.1e-10 69.7 66 59.1
SalBow6G6193 Salvia bowleyana HOM05D002491 ORTHO05D002651 1.1e-10 69.7 67 58.2
Dinv22176 Davidia involucrata HOM05D002491 ORTHO05D002651 1.5e-10 69.3 67 59.7
Sed0022126 Sechium edule HOM05D002491 ORTHO05D002651 2.0e-10 68.9 68 52.9
TWI32G0849 Tripterygium wilfordii HOM05D002491 ORTHO05D002651 2.6e-10 68.6 67 56.7
Actinidia16335 Actinidia chinensis HOM05D002491 ORTHO05D002651 3.3e-10 68.2 85 48.2
Eucgr.B03688 Eucalyptus grandis HOM05D002491 ORTHO05D002651 3.3e-10 68.2 66 56.1
Potri.001G258000 Populus trichocarpa HOM05D002491 ORTHO05D002651 3.3e-10 68.2 67 56.7
Potri.009G053200 Populus trichocarpa HOM05D002491 ORTHO05D002651 3.3e-10 68.2 67 56.7
CiPaw.14G118900 Carya illinoinensis HOM05D002491 ORTHO05D002651 4.4e-10 67.8 67 55.2
Cc00_g08790 Coffea canephora HOM05D002491 ORTHO05D002651 4.4e-10 67.8 67 53.7
Lj6g0022329 Lotus japonicus HOM05D002491 ORTHO05D002651 4.4e-10 67.8 75 54.7
Nn2g15364 Nelumbo nucifera HOM05D002491 ORTHO05D002651 4.4e-10 67.8 67 53.7
FAN21G0443 Fragaria x ananassa HOM05D002491 ORTHO05D002651 5.7e-10 67.4 67 56.7
Gohir.A09G114200 Gossypium hirsutum HOM05D002491 ORTHO05D002651 7.5e-10 67.0 68 54.4
Gorai.006G128500 Gossypium raimondii HOM05D002491 ORTHO05D002651 7.5e-10 67.0 68 54.4
Prupe.4G249700 Prunus persica HOM05D002491 ORTHO05D002651 7.5e-10 67.0 67 56.7
CSS0016561 Camellia sinensis var. sinensis HOM05D002491 ORTHO05D002651 9.7e-10 66.6 87 49.4
CANSAT54G2302 Cannabis sativa HOM05D002491 ORTHO05D002651 9.7e-10 66.6 67 55.2
Migut.N02318 Erythranthe guttata HOM05D002491 ORTHO05D002651 9.7e-10 66.6 67 55.2
Gohir.D09G110900 Gossypium hirsutum HOM05D002491 ORTHO05D002651 9.7e-10 66.6 68 52.9
Nn7g36208 Nelumbo nucifera HOM05D002491 ORTHO05D002651 9.7e-10 66.6 67 55.2
QL01p004678 Quercus lobata HOM05D002491 ORTHO05D002651 9.7e-10 66.6 68 54.4
arahy.Tifrunner.gnm1.ann1.2B6J13 Arachis hypogaea HOM05D002491 ORTHO05D002651 1.3e-09 66.2 74 55.4
arahy.Tifrunner.gnm1.ann1.HQQ03B Arachis hypogaea HOM05D002491 ORTHO05D002651 1.3e-09 66.2 74 55.4
Lalb_Chr15g0082561 Lupinus albus HOM05D002491 ORTHO05D002651 1.3e-09 66.2 72 54.2
PGR102G0148 Punica granatum HOM05D002491 ORTHO05D002651 1.3e-09 66.2 68 54.4
TWI60G0318 Tripterygium wilfordii HOM05D002491 ORTHO05D002651 1.3e-09 66.2 67 55.2
Haze_23140 Corylus avellana HOM05D002491 ORTHO05D002651 1.7e-09 65.9 67 53.7
Duzib150G0100 Durio zibethinus HOM05D002491 ORTHO05D002651 1.7e-09 65.9 67 53.7
Solyc11g065730.3 Solanum lycopersicum HOM05D002491 ORTHO05D002651 1.7e-09 65.9 76 46.1
TPR.G30119 Trifolium pratense HOM05D002491 ORTHO05D002651 1.7e-09 65.9 67 55.2
TAR623G0418 Trochodendron aralioides HOM05D002491 ORTHO05D002651 1.7e-09 65.9 67 52.2
TAR623G0577 Trochodendron aralioides HOM05D002491 ORTHO05D002651 1.7e-09 65.9 67 52.2
Nitab4.5_0001587g0070 Nicotiana tabacum HOM05D002491 ORTHO05D002651 2.2e-09 65.5 68 48.5
Nitab4.5_0002741g0150 Nicotiana tabacum HOM05D002491 ORTHO05D002651 2.2e-09 65.5 68 48.5
Phvul.006G062500 Phaseolus vulgaris HOM05D002491 ORTHO05D002651 2.2e-09 65.5 72 54.2
PGSC0003DMG400007354 Solanum tuberosum HOM05D002491 ORTHO05D002651 2.2e-09 65.5 68 54.4
Thecc.09G234000 Theobroma cacao HOM05D002491 ORTHO05D002651 2.2e-09 65.5 67 53.7
VMungo0540G0593 Vigna mungo HOM05D002491 ORTHO05D002651 2.2e-09 65.5 72 54.2
Lalb_Chr20g0115131 Lupinus albus HOM05D002491 ORTHO05D002651 2.8e-09 65.1 72 51.4
MD03G1174800 Malus domestica HOM05D002491 ORTHO05D002651 2.8e-09 65.1 61 57.4
Sc06g0004580 Simmondsia chinensis HOM05D002491 ORTHO05D002651 2.8e-09 65.1 68 55.9
Sopen11g025490 Solanum pennellii HOM05D002491 ORTHO05D002651 2.8e-09 65.1 76 44.7
MSTRG.18427 Avicennia marina HOM05D002491 ORTHO05D002651 3.7e-09 64.7 67 53.7
HanXRQChr13g0404471 Helianthus annuus HOM05D002491 ORTHO05D002651 3.7e-09 64.7 68 52.9
TAR633G0167 Trochodendron aralioides HOM05D002491 ORTHO05D002651 3.7e-09 64.7 67 55.2
vmacro04155 Vaccinium macrocarpon HOM05D002491 ORTHO05D002651 4.8e-09 64.3 67 52.2
Lj2A630G62 Lonicera japonica HOM05D002491 ORTHO05D002651 6.3e-09 63.9 67 50.7
MD11G1192900 Malus domestica HOM05D002491 ORTHO05D002651 6.3e-09 63.9 61 55.7
SGA_v2.0_scaffold8G04587 Striga asiatica HOM05D002491 ORTHO05D002651 6.3e-09 63.9 68 51.5
CSS0012018 Camellia sinensis var. sinensis HOM05D002491 ORTHO05D002651 8.2e-09 63.5 68 54.4
CSS0027144 Camellia sinensis var. sinensis HOM05D002491 ORTHO05D002651 8.2e-09 63.5 68 54.4
Peaxi162Scf00004g02410 Petunia axillaris HOM05D002491 ORTHO05D002651 8.2e-09 63.5 67 50.7
MSTRG.21377 Avicennia marina HOM05D002491 ORTHO05D002651 1.1e-08 63.2 68 50.0
Oeu025867.2 Olea europaea HOM05D002491 ORTHO05D002651 1.1e-08 63.2 67 50.7
Psat5g163040 Pisum sativum HOM05D002491 ORTHO05D002651 1.1e-08 63.2 74 51.4
unitig_90.g27474 Utricularia gibba HOM05D002491 ORTHO05D002651 1.1e-08 63.2 67 50.7
Duzib170G0093 Durio zibethinus HOM05D002491 ORTHO05D002651 1.4e-08 62.8 67 52.2
Duzib170G0400 Durio zibethinus HOM05D002491 ORTHO05D002651 1.4e-08 62.8 67 52.2
Medtr3g061590 Medicago truncatula HOM05D002491 ORTHO05D002651 1.4e-08 62.8 61 55.7
Aqoxy1G00292 Aquilegia oxysepala HOM05D002491 ORTHO05D002651 1.8e-08 62.4 68 50.0
EL10Ac4g10248 Beta vulgaris HOM05D002491 ORTHO05D002651 1.8e-08 62.4 67 55.2
EL10Ac4g10251 Beta vulgaris HOM05D002491 ORTHO05D002651 1.8e-08 62.4 67 55.2
Ca_14879_v3 Cicer arietinum L. HOM05D002491 ORTHO05D002651 2.4e-08 62.0 74 51.4
COL.COLO4_07582 Corchorus olitorius HOM05D002491 ORTHO05D002651 3.1e-08 61.6 61 54.1
Glyma.08G335600 Glycine max HOM05D002491 ORTHO05D002651 4.1e-08 61.2 67 50.7
Glyma.18G070600 Glycine max HOM05D002491 ORTHO05D002651 4.1e-08 61.2 74 50.0
Lsat_1_v5_gn_6_47960 Lactuca sativa HOM05D002491 ORTHO05D002651 4.1e-08 61.2 61 54.1
ATR0332G107 Amborella trichopoda HOM05D002491 ORTHO05D002651 5.3e-08 60.8 66 51.5
AUR62000121 Chenopodium quinoa HOM05D002491 ORTHO05D002651 5.3e-08 60.8 67 53.7
ECA233G2468 Erigeron canadensis HOM05D002491 ORTHO05D002651 5.3e-08 60.8 68 51.5
Actinidia06342 Actinidia chinensis HOM05D002491 ORTHO05D002651 2.7e-07 58.5 64 50.0
Mapoly0009s0200 Marchantia polymorpha HOM05D002491 ORTHO05D002651 4.5e-07 57.8 80 41.2
Ah.06g194190 Amaranthus hybridus HOM05D002491 ORTHO05D002651 7.7e-07 57.0 67 50.7
CBR_g11151 Chara braunii HOM05D002491 ORTHO05D002651 1.7e-06 55.8 67 43.3
Oeu016683.1 Olea europaea HOM05D002491 ORTHO05D002651 2.2e-06 55.5 68 45.6
BcaB06g26161 Brassica carinata HOM05D002491 ORTHO05D002651 5.0e-06 54.3 43 69.8
AUR62019302 Chenopodium quinoa HOM05D002491 ORTHO05D002651 5.0e-06 54.3 61 47.5


User provided reference genes

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