Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 1.5e-69 266.2 141 100.0
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 9.6e-45 183.7 143 72.0
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 3.7e-44 181.8 143 71.3
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 3.7e-44 181.8 143 71.3
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 3.7e-44 181.8 143 71.3
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 3.7e-44 181.8 143 71.3
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 3.4e-42 175.3 143 68.5
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 2.2e-41 172.6 143 69.9
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 5.5e-40 167.9 144 70.1
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 7.1e-40 167.5 144 70.1
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 9.3e-40 167.2 144 71.5
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 1.6e-39 166.4 141 70.2
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 3.5e-39 165.2 144 71.5
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 4.6e-39 164.9 141 69.5
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 7.9e-39 164.1 141 69.5
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 7.9e-39 164.1 141 68.8
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 1.3e-38 163.3 141 68.8
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 2.9e-33 145.6 146 61.0
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 1.4e-32 143.3 144 62.5
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.8e-27 126.3 143 60.8
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 4.1e-27 125.2 145 53.1
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 2.6e-26 122.5 141 53.2
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 3.3e-21 105.5 139 50.4
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 2.8e-20 102.4 130 53.8
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.2e-18 97.1 142 48.6
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.0e-17 94.0 130 46.2
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 1.3e-17 93.6 55 78.2
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 1.7e-17 93.2 141 48.9
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.7e-17 93.2 55 78.2
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 3.8e-17 92.0 55 76.4
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 6.5e-17 91.3 55 78.2
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 1.4e-16 90.1 52 80.8
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 1.4e-16 90.1 52 80.8
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 7.2e-16 87.8 52 78.8
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 7.2e-16 87.8 52 78.8
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 7.2e-16 87.8 52 78.8
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 9.4e-16 87.4 119 47.1
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 1.2e-15 87.0 119 47.1
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-15 87.0 119 47.1
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 1.2e-15 87.0 119 47.1
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 1.6e-15 86.7 52 75.0
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.6e-15 86.7 86 60.5
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 2.7e-15 85.9 133 40.6
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 2.7e-15 85.9 136 41.9
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 7.9e-15 84.3 133 45.1
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 1.8e-14 83.2 55 67.3
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 2.3e-14 82.8 133 45.1
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 2.3e-14 82.8 133 45.1
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.3e-14 82.8 133 42.9
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 3.0e-14 82.4 86 50.0
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 1.5e-13 80.1 49 71.4
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.0e-13 79.7 131 40.5
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.6e-13 79.3 49 69.4
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.6e-13 79.3 49 69.4
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 2.6e-13 79.3 62 56.5
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 3.3e-13 79.0 76 48.7
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 4.4e-13 78.6 133 37.6
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 4.4e-13 78.6 137 40.1
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 4.4e-13 78.6 52 65.4
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 5.7e-13 78.2 53 60.4
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 5.7e-13 78.2 53 60.4
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 5.7e-13 78.2 53 60.4
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 5.7e-13 78.2 53 60.4
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 5.7e-13 78.2 138 39.9
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 7.4e-13 77.8 52 65.4
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 7.4e-13 77.8 88 45.5
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 7.4e-13 77.8 52 65.4
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 7.4e-13 77.8 88 45.5
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 9.7e-13 77.4 50 70.0
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.3e-12 77.0 61 62.3
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 1.7e-12 76.6 50 70.0
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.7e-12 76.6 49 65.3
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 2.2e-12 76.3 49 67.3
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.2e-12 76.3 139 39.6
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 2.2e-12 76.3 52 63.5
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.2e-12 76.3 107 42.1
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 2.2e-12 76.3 52 65.4
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 2.2e-12 76.3 50 72.0
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.8e-12 75.9 50 68.0
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 2.8e-12 75.9 56 64.3
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.8e-12 75.9 53 58.5
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 2.8e-12 75.9 52 65.4
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 2.8e-12 75.9 140 41.4
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 2.8e-12 75.9 52 61.5
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 2.8e-12 75.9 50 64.0
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 3.7e-12 75.5 136 40.4
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 4.8e-12 75.1 78 46.2
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.8e-12 75.1 52 59.6
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.8e-12 75.1 130 36.9
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 4.8e-12 75.1 139 38.1
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 6.3e-12 74.7 127 40.2
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 6.3e-12 74.7 91 40.7
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 8.2e-12 74.3 83 45.8
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 8.2e-12 74.3 134 37.3
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.1e-11 73.9 136 36.8
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 1.1e-11 73.9 78 51.3
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.4e-11 73.6 52 63.5
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.4e-11 73.6 134 37.3
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.4e-11 73.6 50 62.0
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.4e-11 73.6 50 62.0
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.8e-11 73.2 123 39.0
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 1.8e-11 73.2 50 60.0
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.8e-11 73.2 50 66.0
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.8e-11 73.2 134 37.3
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 1.8e-11 73.2 49 61.2
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 2.4e-11 72.8 49 65.3
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 2.4e-11 72.8 125 36.8
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 2.4e-11 72.8 174 36.2
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 3.1e-11 72.4 98 43.9
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 3.1e-11 72.4 49 61.2
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 3.1e-11 72.4 50 66.0
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.1e-11 72.0 51 68.6
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.1e-11 72.0 51 68.6
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 7.0e-11 71.2 102 43.1
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 7.0e-11 71.2 49 61.2
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 7.0e-11 71.2 49 61.2
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 9.1e-11 70.9 42 76.2
BcaC01g01256 Brassica carinata HOM05D003595 ORTHO05D004132 9.1e-11 70.9 55 61.8
BolC3t21307H Brassica oleracea HOM05D003595 ORTHO05D004132 9.1e-11 70.9 55 61.8
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 9.1e-11 70.9 53 62.3
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 9.1e-11 70.9 133 37.6
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 9.1e-11 70.9 64 54.7
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 9.1e-11 70.9 137 36.5
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 1.2e-10 70.5 49 63.3
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 1.2e-10 70.5 135 41.5
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.6e-10 70.1 86 46.5
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 1.6e-10 70.1 51 62.7
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 2.6e-10 69.3 49 63.3
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.5e-10 68.9 48 66.7
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.5e-10 68.9 52 57.7
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 4.5e-10 68.6 52 59.6
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 4.5e-10 68.6 49 59.2
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 5.9e-10 68.2 49 61.2
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 5.9e-10 68.2 49 57.1
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 7.7e-10 67.8 79 45.6
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 7.7e-10 67.8 55 60.0
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 7.7e-10 67.8 105 40.0
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 1.0e-09 67.4 52 53.8
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 1.3e-09 67.0 52 61.5
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 1.7e-09 66.6 52 61.5
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 2.2e-09 66.2 54 59.3
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 2.2e-09 66.2 48 62.5
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 2.2e-09 66.2 52 63.5
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 2.2e-09 66.2 49 55.1
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 2.9e-09 65.9 54 51.9
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 2.9e-09 65.9 58 50.0
Sp1g38020 Schrenkiella parvula HOM05D003595 ORTHO05D004132 2.9e-09 65.9 52 61.5
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 3.8e-09 65.5 132 34.8
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.0e-09 65.1 48 64.6
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 5.0e-09 65.1 99 38.4
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 6.5e-09 64.7 129 35.7
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 8.5e-09 64.3 52 55.8
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 8.5e-09 64.3 52 55.8
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 8.5e-09 64.3 80 43.8
C03p89850 Brassica napus HOM05D003595 ORTHO05D004132 1.5e-08 63.5 118 41.5
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 1.5e-08 63.5 52 61.5
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 1.5e-08 63.5 134 38.8
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 2.5e-08 62.8 100 43.0
BcaB02g11234 Brassica carinata HOM05D003595 ORTHO05D004132 3.2e-08 62.4 117 41.9
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 3.2e-08 62.4 54 57.4
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.2e-08 62.4 55 52.7
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 5.5e-08 61.6 56 53.6
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 7.2e-08 61.2 52 51.9
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 9.4e-08 60.8 49 57.1
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 1.6e-07 60.1 135 32.6
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.7e-07 59.3 52 57.7
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 2.7e-07 59.3 51 49.0
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 2.7e-07 59.3 51 49.0
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.6e-07 58.9 94 40.4
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 3.6e-07 58.9 57 49.1
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 4.7e-07 58.5 54 51.9
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 8.0e-07 57.8 48 60.4
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 8.0e-07 57.8 60 48.3
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 8.0e-07 57.8 60 48.3
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 1.4e-06 57.0 53 52.8
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.4e-06 57.0 55 47.3
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.4e-06 57.0 67 44.8
PGR142G2811 Punica granatum HOM05D002383 ORTHO05D002515 1.4e-06 57.0 75 44.0
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 2.3e-06 56.2 46 54.3
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 2.3e-06 56.2 52 57.7
Nn4g22639 Nelumbo nucifera HOM05D002383 ORTHO05D002515 4.0e-06 55.5 75 40.0
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 5.2e-06 55.1 62 46.8
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 5.2e-06 55.1 45 55.6
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 8.8e-06 54.3 73 38.4


User provided reference genes

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