Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 2.5e-29 132.1 107 100.0
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 3.1e-27 125.2 107 86.0
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 5.3e-27 124.4 107 86.0
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 5.3e-27 124.4 107 80.4
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 1.5e-26 122.9 107 86.0
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 5.8e-26 120.9 105 79.0
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 5.8e-26 120.9 107 62.6
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 7.6e-26 120.6 107 68.2
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 7.6e-26 120.6 107 62.6
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 7.6e-26 120.6 107 68.2
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 7.6e-26 120.6 107 86.9
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 2.9e-25 118.6 107 61.7
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 4.9e-25 117.9 107 64.5
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 4.9e-25 117.9 107 64.5
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 4.9e-25 117.9 107 64.5
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 6.4e-25 117.5 107 64.5
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.4e-24 115.5 107 63.6
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 2.4e-24 115.5 107 63.6
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 2.4e-24 115.5 107 59.8
A03p42000 Brassica napus HOM05D004268 ORTHO05D004958 7.1e-24 114.0 107 87.9
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 7.1e-24 114.0 107 61.7
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 4.6e-23 111.3 107 59.8
BcaB04g19135 Brassica carinata HOM05D004268 ORTHO05D004958 7.9e-23 110.5 107 87.9
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 3.9e-22 108.2 107 59.8
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 4.9e-17 91.3 111 52.3
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 2.4e-16 89.0 108 50.9
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 2.4e-16 89.0 108 50.9
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 2.4e-16 89.0 108 50.9
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.4e-16 89.0 108 50.9
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.6e-15 86.3 108 49.1
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.1e-15 85.9 108 49.1
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 4.6e-15 84.7 108 49.1
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 5.1e-14 81.3 108 47.2
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 2.5e-13 79.0 107 44.9
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.4e-11 72.4 111 42.3
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 4.5e-10 68.2 108 41.7
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 4.5e-10 68.2 112 40.2
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 1.3e-09 66.6 105 63.8
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.3e-09 66.6 108 48.1
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.7e-09 66.2 107 42.1
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 2.9e-09 65.5 111 44.1
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 6.5e-09 64.3 106 38.7
BcaB07g33586 Brassica carinata HOM05D004268 ORTHO05D004958 8.4e-09 63.9 105 72.4
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 1.1e-08 63.5 110 47.3
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 1.4e-08 63.2 106 39.6
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 1.4e-08 63.2 110 60.0
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.9e-08 62.8 107 44.9
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.9e-08 62.8 107 53.3
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 4.2e-08 61.6 107 58.9
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 4.2e-08 61.6 109 40.4
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.6e-07 59.7 111 39.6
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 2.1e-07 59.3 105 54.3
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.1e-07 59.3 105 54.3
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.1e-07 59.3 105 55.2
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 2.1e-07 59.3 105 41.9
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.7e-07 58.9 105 55.2
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.7e-07 58.9 105 41.0
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 3.5e-07 58.5 110 40.0
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 6.0e-07 57.8 110 57.3
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 6.0e-07 57.8 109 37.6
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.3e-06 56.6 110 38.2
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 1.3e-06 56.6 107 35.5
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.8e-06 56.2 109 38.5
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 3.0e-06 55.5 111 50.5
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 3.0e-06 55.5 109 56.0
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.9e-06 55.1 111 36.0
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.9e-06 55.1 111 36.0
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 3.9e-06 55.1 113 38.9
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 3.9e-06 55.1 109 54.1
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 5.1e-06 54.7 109 36.7
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 8.7e-06 53.9 108 38.9
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 8.7e-06 53.9 109 35.8
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 8.7e-06 53.9 28 85.7


User provided reference genes

Program Settings