Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 1.0e-307 1059.3 549 100.0
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 7.0e-285 983.4 549 91.4
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.2e-284 982.6 549 91.6
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 1.6e-284 982.2 549 91.6
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 7.8e-284 979.9 549 91.4
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 3.1e-280 968.0 549 89.1
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 1.3e-275 952.6 549 87.8
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 8.4e-270 933.3 550 85.6
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 1.1e-269 932.9 552 85.7
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.7e-267 925.6 550 84.7
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 2.8e-265 918.3 550 86.5
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.6e-260 902.5 512 90.6
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 8.7e-251 870.2 552 82.1
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.8e-243 845.9 547 78.1
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 5.3e-224 781.2 402 93.5
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 1.0e-222 776.9 551 72.2
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 1.6e-220 769.6 549 70.5
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 1.7e-217 759.6 553 70.9
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 3.7e-217 758.4 557 69.3
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 6.3e-217 757.7 548 70.3
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 1.4e-216 756.5 549 70.5
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 4.1e-216 755.0 543 70.7
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 4.1e-216 755.0 513 74.3
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.2e-215 753.4 552 69.7
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 2.0e-215 752.7 511 73.6
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 2.6e-215 752.3 514 73.2
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 2.6e-215 752.3 552 69.7
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 2.6e-215 752.3 488 75.6
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 3.4e-215 751.9 511 73.2
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 7.7e-215 750.7 552 69.4
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 7.7e-215 750.7 552 69.2
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.9e-214 748.8 511 73.0
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 8.5e-214 747.3 516 72.7
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.9e-213 746.1 511 72.8
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 2.5e-213 745.7 561 67.7
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 3.2e-213 745.3 537 70.6
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 5.5e-213 744.6 511 72.6
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 7.2e-213 744.2 561 67.6
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 4.7e-212 741.5 488 74.4
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 1.0e-211 740.3 549 68.7
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.0e-211 740.3 478 76.4
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 1.1e-210 736.9 555 67.9
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 9.7e-210 733.8 555 67.6
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 4.8e-209 731.5 555 67.2
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 1.1e-208 730.3 489 73.4
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 5.3e-208 728.0 506 71.5
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 5.3e-208 728.0 553 68.0
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 2.0e-207 726.1 519 69.6
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 2.6e-207 725.7 538 68.6
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 4.5e-207 724.9 561 65.8
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 1.0e-206 723.8 543 68.0
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.1e-205 720.3 558 66.7
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 1.5e-205 719.9 557 67.0
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 1.9e-205 719.5 541 68.8
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.9e-205 719.5 557 67.0
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 5.5e-205 718.0 555 65.9
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 9.4e-205 717.2 525 68.2
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 2.7e-204 715.7 517 69.8
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 6.1e-204 714.5 548 66.1
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 6.1e-204 714.5 548 66.2
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 6.1e-204 714.5 489 71.2
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.8e-203 713.0 543 68.0
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 3.0e-203 712.2 549 66.8
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 1.5e-202 709.9 540 67.4
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.5e-202 709.9 549 67.6
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 2.6e-202 709.1 535 66.7
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 3.3e-202 708.8 539 67.3
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 4.4e-202 708.4 561 66.3
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 5.7e-202 708.0 535 66.7
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 7.5e-202 707.6 551 66.8
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.3e-201 706.8 545 66.1
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 1.7e-201 706.4 523 68.1
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 2.8e-201 705.7 548 65.3
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 3.7e-201 705.3 549 66.8
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 1.4e-200 703.4 553 66.9
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.0e-199 699.5 535 67.5
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.0e-199 699.5 557 64.3
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 1.3e-198 696.8 550 65.6
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 2.2e-198 696.0 517 68.5
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 2.9e-198 695.7 546 65.2
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 2.9e-198 695.7 547 64.4
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 8.5e-198 694.1 515 68.7
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 1.9e-197 693.0 487 71.5
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 2.5e-197 692.6 523 66.7
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 9.4e-197 690.6 566 62.7
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 9.4e-197 690.6 528 67.2
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 3.6e-196 688.7 540 64.8
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.0e-195 685.6 470 70.6
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 5.2e-195 684.9 545 64.2
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 7.5e-194 681.0 408 78.7
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 9.8e-194 680.6 555 63.4
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 1.7e-193 679.9 512 67.8
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 2.8e-193 679.1 562 63.0
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 3.7e-193 678.7 566 61.7
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 6.3e-193 677.9 512 67.8
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 1.6e-191 673.3 537 63.3
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.0e-190 670.6 570 61.1
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.3e-190 670.2 532 64.3
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.9e-190 669.1 523 64.8
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 2.5e-189 666.0 640 56.7
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 3.3e-189 665.6 515 66.8
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 3.3e-189 665.6 518 65.4
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 1.2e-188 663.7 516 64.5
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 1.2e-188 663.7 516 64.5
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 6.1e-188 661.4 559 61.2
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 8.0e-188 661.0 464 70.9
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 1.4e-187 660.2 463 70.8
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 2.0e-186 656.4 559 61.0
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.6e-186 656.0 564 61.0
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 7.5e-186 654.4 565 62.7
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 1.3e-185 653.7 559 60.8
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 1.7e-185 653.3 572 61.2
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.1e-184 650.6 524 65.5
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 1.8e-184 649.8 533 63.0
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 5.4e-184 648.3 564 59.9
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 3.3e-181 639.0 510 65.9
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 5.6e-181 638.3 559 59.9
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.0e-179 634.0 545 62.4
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 9.8e-178 627.5 534 61.0
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 8.9e-171 604.4 550 58.4
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 1.6e-167 593.6 569 55.4
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 3.6e-164 582.4 489 60.9
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 4.7e-164 582.0 568 55.1
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.0e-154 550.1 448 61.4
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 4.6e-151 538.9 575 52.0
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 7.8e-151 538.1 552 56.0
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 1.8e-147 526.9 497 57.3
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.7e-145 520.4 556 51.8
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.1e-143 513.5 535 53.8
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.6e-135 487.3 557 49.0
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.1e-132 476.9 353 68.8
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 6.9e-131 471.9 428 59.1
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.1e-128 464.5 479 50.7
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 2.1e-127 460.3 357 65.3
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 1.0e-126 458.0 435 57.9
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 3.0e-126 456.4 572 47.0
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 6.2e-124 448.7 375 63.7
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 8.2e-124 448.4 477 52.6
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 9.1e-107 391.7 389 57.6
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.0e-98 364.0 306 57.5
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 6.5e-97 359.0 536 41.8
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 4.7e-95 352.8 512 43.2
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 1.3e-65 255.0 324 49.1
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 2.1e-63 247.7 306 48.0
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 6.6e-57 226.1 460 33.7
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 1.5e-56 224.9 164 72.0
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 7.8e-50 202.6 172 61.6
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 3.3e-48 197.2 465 33.3
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 4.0e-46 190.3 476 30.9
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.0e-45 188.0 91 94.5
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 9.9e-45 185.7 118 79.7
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 8.4e-44 182.6 368 37.5
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 7.3e-40 169.5 109 79.8
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 8.1e-39 166.0 96 78.1
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 5.2e-38 163.3 446 28.9
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 3.2e-35 154.1 169 49.1
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 8.1e-31 139.4 157 47.8
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 3.4e-21 107.5 148 49.3
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 5.5e-19 100.1 79 59.5
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 6.0e-18 96.7 162 45.7
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 6.0e-18 96.7 160 38.8
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 5.3e-14 83.6 98 51.0
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.2e-13 82.4 40 90.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.1e-11 75.9 48 68.8
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.9e-11 75.1 40 80.0
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 5.7e-08 63.5 33 75.8
BcaB02g10557 Brassica carinata HOM05D058416 ORTHO05D005017 7.4e-08 63.2 54 64.8
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 7.4e-08 63.2 32 81.2
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 1.6e-07 62.0 246 26.0
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 1.6e-07 62.0 187 23.5
BcaB04g21125 Brassica carinata HOM05D058416 ORTHO05D095930 2.8e-07 61.2 54 63.0
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 6.3e-07 60.1 246 25.6
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 3.1e-06 57.8 246 24.4
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 4.1e-06 57.4 243 24.7
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 4.1e-06 57.4 243 24.7
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 6.9e-06 56.6 233 23.6
BcaB07g30396 Brassica carinata HOM05D000992 ORTHO05D001928 6.9e-06 56.6 246 24.4


User provided reference genes

Program Settings