Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 2.0e-71 272.3 139 100.0
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 2.0e-66 255.8 139 93.5
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 2.0e-66 255.8 139 93.5
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 1.3e-65 253.1 139 92.8
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 1.3e-65 253.1 139 92.8
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 1.1e-64 250.0 139 92.1
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 2.4e-56 222.2 142 83.1
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 4.5e-55 218.0 139 82.7
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 5.0e-54 214.5 139 79.9
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 4.3e-53 211.5 143 79.7
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 1.2e-50 203.4 141 78.7
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 3.3e-45 185.3 151 72.2
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 6.6e-30 134.4 163 56.4
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 1.3e-17 93.6 210 35.7
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 4.9e-17 91.7 171 39.8
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 1.1e-16 90.5 180 40.6
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 4.2e-16 88.6 151 39.1
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 9.3e-16 87.4 180 37.2
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.6e-15 86.7 206 36.9
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 2.7e-15 85.9 203 34.0
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 3.5e-15 85.5 203 34.0
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 4.6e-15 85.1 204 35.8
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 4.6e-15 85.1 206 35.9
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 7.8e-15 84.3 190 40.0
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 1.0e-14 84.0 196 33.7
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 1.7e-14 83.2 201 35.8
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 2.3e-14 82.8 175 41.1
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 3.9e-14 82.0 204 35.3
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 5.1e-14 81.6 206 35.4
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 8.7e-14 80.9 186 36.0
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 1.9e-13 79.7 202 35.1
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 2.5e-13 79.3 188 35.6
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 2.5e-13 79.3 188 35.6
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 3.3e-13 79.0 182 36.3
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.3e-13 79.0 182 37.4
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 4.3e-13 78.6 206 35.0
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 4.3e-13 78.6 164 38.4
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 5.6e-13 78.2 191 35.1
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 5.6e-13 78.2 187 35.8
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 9.6e-13 77.4 165 37.0
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 9.6e-13 77.4 194 34.5
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 1.3e-12 77.0 200 35.5
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 1.3e-12 77.0 195 30.8
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 1.6e-12 76.6 198 36.9
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 2.1e-12 76.3 183 37.2
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.1e-12 76.3 183 37.2
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.1e-12 76.3 183 37.2
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.1e-12 76.3 184 35.9
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.1e-12 76.3 200 34.0
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.8e-12 75.9 179 36.9
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 2.8e-12 75.9 188 35.6
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.8e-12 75.9 200 34.0
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 2.8e-12 75.9 175 34.9
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 2.8e-12 75.9 201 35.3
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 3.6e-12 75.5 206 33.5
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 3.6e-12 75.5 210 33.3
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 4.8e-12 75.1 183 37.2
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.1e-12 74.3 200 33.5
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 8.1e-12 74.3 169 38.5
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 8.1e-12 74.3 189 36.0
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 1.1e-11 73.9 212 32.5
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.1e-11 73.9 181 33.7
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 1.8e-11 73.2 202 33.2
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 2.4e-11 72.8 190 32.1
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 4.0e-11 72.0 213 31.5
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.0e-11 72.0 184 34.8
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 4.0e-11 72.0 187 33.2
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 5.3e-11 71.6 184 36.4
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 5.3e-11 71.6 182 34.6
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 5.3e-11 71.6 212 31.1
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 6.9e-11 71.2 213 31.0
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 9.0e-11 70.9 214 30.8
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 1.2e-10 70.5 177 34.5
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.2e-10 70.5 216 33.8
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.2e-10 70.5 169 36.1
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 1.2e-10 70.5 205 34.6
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 1.2e-10 70.5 141 37.6
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.5e-10 70.1 202 34.7
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 1.5e-10 70.1 160 38.1
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 3.4e-10 68.9 177 33.3
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 3.4e-10 68.9 202 34.7
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.4e-10 68.9 202 34.2
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 3.4e-10 68.9 151 35.1
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 4.4e-10 68.6 164 37.8
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 4.4e-10 68.6 209 28.7
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 5.8e-10 68.2 212 31.6
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 5.8e-10 68.2 226 34.1
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 7.6e-10 67.8 205 32.2
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 7.6e-10 67.8 186 34.4
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 1.3e-09 67.0 216 31.5
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 1.3e-09 67.0 163 33.1
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 1.7e-09 66.6 162 34.0
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 1.7e-09 66.6 137 37.2
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 1.7e-09 66.6 171 35.7
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 3.8e-09 65.5 174 34.5
Peaxi162Scf00095g00034 Petunia axillaris HOM05D001921 ORTHO05D001784 6.4e-09 64.7 177 32.2
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 1.4e-08 63.5 187 31.6
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 3.2e-08 62.4 208 28.8
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 4.2e-08 62.0 187 31.0
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 5.4e-08 61.6 148 38.5
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 7.1e-08 61.2 207 31.9
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 9.3e-08 60.8 185 34.1
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 9.3e-08 60.8 207 32.4
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 1.2e-07 60.5 198 30.8
Cc03_g02690 Coffea canephora HOM05D001921 ORTHO05D001784 1.2e-07 60.5 98 39.8
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.1e-07 59.7 54 59.3
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 2.7e-07 59.3 146 37.7
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 2.7e-07 59.3 185 33.5
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 3.5e-07 58.9 225 32.4
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 4.6e-07 58.5 180 32.8
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 4.6e-07 58.5 131 35.9
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 4.6e-07 58.5 83 51.8
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 6.0e-07 58.2 189 28.6
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 7.9e-07 57.8 177 31.1
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 7.9e-07 57.8 171 33.9
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 1.0e-06 57.4 189 31.2
Rhsim02G0206800 Rhododendron simsii HOM05D001921 ORTHO05D001784 1.3e-06 57.0 158 33.5
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.7e-06 56.6 54 61.1
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 3.0e-06 55.8 214 29.4


User provided reference genes

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