Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20575 Brassica carinata HOM05D036726 ORTHO05D094925 1.8e-59 232.3 108 100.0
BcaC06g31963 Brassica carinata HOM05D036726 ORTHO05D001557 6.0e-55 217.2 100 100.0
BcaB04g17026 Brassica carinata HOM05D036726 ORTHO05D001557 2.1e-47 192.2 100 92.0
Psat6g153360 Pisum sativum HOM05D000274 ORTHO05D007831 3.1e-11 72.0 64 56.2
C02p44270 Brassica napus HOM05D000660 ORTHO05D000766 7.7e-10 67.4 116 42.2
Duzib138G1129 Durio zibethinus HOM05D000274 ORTHO05D007831 1.3e-09 66.6 58 51.7
Aa31LG2G3170 Aethionema arabicum HOM05D000274 ORTHO05D007831 2.9e-09 65.5 90 43.3
AL2G24630 Arabidopsis lyrata HOM05D000274 ORTHO05D007831 2.9e-09 65.5 90 43.3
AT1G66670 Arabidopsis thaliana HOM05D000274 ORTHO05D007831 2.9e-09 65.5 90 43.3
EL10Ac2g04500 Beta vulgaris HOM05D000274 ORTHO05D007831 2.9e-09 65.5 90 43.3
Carub.0002s1287 Capsella rubella HOM05D000274 ORTHO05D007831 2.9e-09 65.5 90 43.3
CARHR058720 Cardamine hirsuta HOM05D000274 ORTHO05D007831 2.9e-09 65.5 90 43.3
Sp5g21610 Schrenkiella parvula HOM05D000274 ORTHO05D007831 2.9e-09 65.5 90 43.3
Thhalv10018911m.g Eutrema salsugineum HOM05D000274 ORTHO05D007831 3.8e-09 65.1 90 42.2
Ah.16g101390 Amaranthus hybridus HOM05D000274 ORTHO05D007831 5.0e-09 64.7 90 42.2
C02p23930 Brassica napus HOM05D000660 ORTHO05D000766 5.0e-09 64.7 119 42.0
CSS0039425 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D007831 1.5e-08 63.2 90 41.1
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.5e-08 63.2 90 40.0
Cpa.g.sc116.12 Carica papaya HOM05D000274 ORTHO05D007831 1.9e-08 62.8 90 40.0
Lalb_Chr10g0091591 Lupinus albus HOM05D000274 ORTHO05D007831 1.9e-08 62.8 90 40.0
Ah.10g037890 Amaranthus hybridus HOM05D000534 ORTHO05D000389 2.5e-08 62.4 90 41.1
ATR0326G029 Amborella trichopoda HOM05D000274 ORTHO05D007831 2.5e-08 62.4 90 38.9
BcaB03g15255 Brassica carinata HOM05D000274 ORTHO05D007831 2.5e-08 62.4 90 42.2
Glyma.02G091200 Glycine max HOM05D000274 ORTHO05D007831 2.5e-08 62.4 90 38.9
Glyma.18G291900 Glycine max HOM05D000274 ORTHO05D007831 2.5e-08 62.4 90 38.9
Phvul.008G010000 Phaseolus vulgaris HOM05D000274 ORTHO05D007831 2.5e-08 62.4 90 38.9
VMungo1383G2054 Vigna mungo HOM05D000274 ORTHO05D007831 2.5e-08 62.4 90 38.9
arahy.Tifrunner.gnm1.ann1.BD9PAW Arachis hypogaea HOM05D000274 ORTHO05D007831 3.2e-08 62.0 90 38.9
arahy.Tifrunner.gnm1.ann1.CE4L5A Arachis hypogaea HOM05D000274 ORTHO05D007831 3.2e-08 62.0 90 38.9
BraA07t30977Z Brassica rapa HOM05D000274 ORTHO05D007831 3.2e-08 62.0 90 41.1
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 4.2e-08 61.6 90 38.9
AUR62023207 Chenopodium quinoa HOM05D000274 ORTHO05D007831 5.5e-08 61.2 90 40.0
AUR62023253 Chenopodium quinoa HOM05D000274 ORTHO05D007831 5.5e-08 61.2 90 40.0
Ca_08104_v3 Cicer arietinum L. HOM05D000274 ORTHO05D007831 5.5e-08 61.2 90 40.0
FAN01G1026 Fragaria x ananassa HOM05D000274 ORTHO05D007831 5.5e-08 61.2 90 40.0
Medtr7g082980 Medicago truncatula HOM05D000274 ORTHO05D007831 5.5e-08 61.2 90 40.0
Psat3g096320 Pisum sativum HOM05D000274 ORTHO05D007831 5.5e-08 61.2 90 38.9
TAR622G0238 Trochodendron aralioides HOM05D000274 ORTHO05D007831 5.5e-08 61.2 90 40.0
CAN.G625.76 Capsicum annuum HOM05D000274 ORTHO05D007831 7.2e-08 60.8 90 40.0
FvH4_7g04110 Fragaria vesca HOM05D000274 ORTHO05D007831 7.2e-08 60.8 90 40.0
FAN03G2000 Fragaria x ananassa HOM05D000274 ORTHO05D007831 7.2e-08 60.8 90 40.0
FAN06G3687 Fragaria x ananassa HOM05D000274 ORTHO05D007831 7.2e-08 60.8 90 40.0
FAN10G1368 Fragaria x ananassa HOM05D000504 ORTHO05D000403 7.2e-08 60.8 90 40.0
Hma1.2p1_0283F.1_g113610 Hydrangea macrophylla HOM05D000274 ORTHO05D007831 7.2e-08 60.8 90 40.0
Lj1g0005631 Lotus japonicus HOM05D000274 ORTHO05D007831 7.2e-08 60.8 90 37.8
Nitab4.5_0002456g0170 Nicotiana tabacum HOM05D000274 ORTHO05D007831 7.2e-08 60.8 90 40.0
Nitab4.5_0003598g0090 Nicotiana tabacum HOM05D000274 ORTHO05D007831 7.2e-08 60.8 90 40.0
BcaC08g46104 Brassica carinata HOM05D000274 ORTHO05D007831 9.4e-08 60.5 90 40.0
C06p39920 Brassica napus HOM05D000274 ORTHO05D007831 9.4e-08 60.5 90 40.0
BolC6t39080H Brassica oleracea HOM05D000274 ORTHO05D007831 9.4e-08 60.5 90 40.0
Ciclev10012172m.g Citrus clementina HOM05D000274 ORTHO05D007831 9.4e-08 60.5 90 40.0
Gohir.A07G076200 Gossypium hirsutum HOM05D000274 ORTHO05D007831 9.4e-08 60.5 90 38.9
Gohir.D07G080700 Gossypium hirsutum HOM05D000274 ORTHO05D007831 9.4e-08 60.5 90 38.9
PGR004G2815 Punica granatum HOM05D000274 ORTHO05D007831 9.4e-08 60.5 90 40.0
QL02p048549 Quercus lobata HOM05D000274 ORTHO05D007831 9.4e-08 60.5 90 38.9
CDE10G1171 Ceratophyllum demersum HOM05D000274 ORTHO05D007831 1.2e-07 60.1 90 37.8
CDE10G1253 Ceratophyllum demersum HOM05D000274 ORTHO05D007831 1.2e-07 60.1 90 37.8
ClCG05G010770 Citrullus lanatus HOM05D000274 ORTHO05D007831 1.2e-07 60.1 90 40.0
MELO3C020312.2 Cucumis melo HOM05D000274 ORTHO05D007831 1.2e-07 60.1 90 40.0
DCAR_025884 Daucus carota HOM05D000274 ORTHO05D007831 1.2e-07 60.1 90 38.9
RcHm_v2.0_Chr1g0327981 Rosa chinensis HOM05D000274 ORTHO05D007831 1.2e-07 60.1 90 38.9
Sc10g0000930 Simmondsia chinensis HOM05D000274 ORTHO05D007831 1.2e-07 60.1 90 37.8
GSVIVG01030894001 Vitis vinifera HOM05D000274 ORTHO05D007831 1.2e-07 60.1 90 40.0
CiPaw.03G067500 Carya illinoinensis HOM05D000274 ORTHO05D007831 1.6e-07 59.7 90 38.9
Solyc02g091280.3 Solanum lycopersicum HOM05D000274 ORTHO05D007831 1.6e-07 59.7 90 38.9
Sopen02g035900 Solanum pennellii HOM05D000274 ORTHO05D007831 1.6e-07 59.7 90 38.9
PGSC0003DMG402030641 Solanum tuberosum HOM05D000274 ORTHO05D007831 1.6e-07 59.7 90 38.9
unitig_88.g27801 Utricularia gibba HOM05D000274 ORTHO05D007831 1.6e-07 59.7 90 38.9
Cc07_g08270 Coffea canephora HOM05D000274 ORTHO05D007831 2.1e-07 59.3 90 38.9
MD02G1275200 Malus domestica HOM05D000274 ORTHO05D007831 2.1e-07 59.3 90 38.9
Prupe.2G045800 Prunus persica HOM05D000274 ORTHO05D007831 2.7e-07 58.9 90 37.8
THA.LOC104805596 Tarenaya hassleriana HOM05D000274 ORTHO05D007831 2.7e-07 58.9 90 38.9
CsaV3_3G021700 Cucumis sativus L. HOM05D000274 ORTHO05D007831 3.6e-07 58.5 90 38.9
Oeu030806.2 Olea europaea HOM05D000274 ORTHO05D007831 3.6e-07 58.5 90 37.8
Dinv19001 Davidia involucrata HOM05D000274 ORTHO05D007831 4.7e-07 58.2 90 37.8
Eucgr.J01541 Eucalyptus grandis HOM05D000274 ORTHO05D007831 6.1e-07 57.8 90 37.8
MBI16_g32950_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D007831 6.1e-07 57.8 90 36.7
MD07G1043100 Malus domestica HOM05D000274 ORTHO05D007831 6.1e-07 57.8 90 36.7
Psat0s4110g0080 Pisum sativum HOM05D000274 ORTHO05D007831 6.1e-07 57.8 90 37.8
Sed0007094 Sechium edule HOM05D000274 ORTHO05D007831 6.1e-07 57.8 90 40.0
CANSAT56G2315 Cannabis sativa HOM05D000274 ORTHO05D007831 1.0e-06 57.0 90 37.8
COL.COLO4_27121 Corchorus olitorius HOM05D000274 ORTHO05D007831 1.0e-06 57.0 90 36.7
Lj2C436G8 Lonicera japonica HOM05D000274 ORTHO05D007831 1.0e-06 57.0 90 36.7
Manes.02G074000 Manihot esculenta HOM05D000274 ORTHO05D007831 1.0e-06 57.0 90 37.8
Oeu041975.1 Olea europaea HOM05D000274 ORTHO05D007831 1.0e-06 57.0 90 37.8
PSO063G5550 Papaver somniferum HOM05D000274 ORTHO05D007831 1.0e-06 57.0 90 36.7
PSO782G4478 Papaver somniferum HOM05D000274 ORTHO05D007831 1.0e-06 57.0 90 36.7
Peaxi162Scf00803g00423 Petunia axillaris HOM05D000274 ORTHO05D007831 1.0e-06 57.0 90 38.9
Thecc.04G123500 Theobroma cacao HOM05D000274 ORTHO05D007831 1.0e-06 57.0 90 36.7
TPR.G28538 Trifolium pratense HOM05D000274 ORTHO05D007831 1.0e-06 57.0 90 37.8
MSTRG.23609 Avicennia marina HOM05D000274 ORTHO05D007831 1.4e-06 56.6 90 36.7
Sabra04G0061900 Salix brachista HOM05D000274 ORTHO05D007831 1.4e-06 56.6 90 37.8
AagrBONN_evm.TU.Sc2ySwM_228.3068 Anthoceros agrestis HOM05D000274 ORTHO05D007831 2.3e-06 55.8 90 37.8
Migut.L00478 Erythranthe guttata HOM05D000274 ORTHO05D007831 2.3e-06 55.8 90 36.7
SalBow3G4436 Salvia bowleyana HOM05D000274 ORTHO05D007831 2.3e-06 55.8 90 35.6
Pp3c14_13060 Physcomitrium patens HOM05D000274 ORTHO05D007831 3.0e-06 55.5 90 36.7
Pp3c14_13063 Physcomitrium patens HOM05D000274 ORTHO05D007831 3.0e-06 55.5 90 36.7
Potri.004G092100 Populus trichocarpa HOM05D000274 ORTHO05D007831 3.0e-06 55.5 90 36.7
TWI74G0782 Tripterygium wilfordii HOM05D000274 ORTHO05D007831 4.0e-06 55.1 90 36.7
Mapoly0006s0256 Marchantia polymorpha HOM05D000274 ORTHO05D007831 5.2e-06 54.7 90 35.6


User provided reference genes

Program Settings