Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20503 Brassica carinata HOM05D002250 ORTHO05D027706 3.7e-57 224.6 106 100.0
A08p06720 Brassica napus HOM05D002250 ORTHO05D027706 4.6e-31 137.9 95 74.7
BraA04t16677Z Brassica rapa HOM05D002250 ORTHO05D027706 4.6e-31 137.9 95 74.7
BraA08t32687Z Brassica rapa HOM05D002250 ORTHO05D027706 4.6e-31 137.9 95 74.7
BcaB01g05751 Brassica carinata HOM05D002250 ORTHO05D002393 1.6e-15 86.3 60 71.7
BcaB01g05963 Brassica carinata HOM05D002250 ORTHO05D002393 1.6e-15 86.3 60 71.7
C03p02770 Brassica napus HOM05D002250 ORTHO05D002393 1.6e-15 86.3 60 71.7
BolC3t12831H Brassica oleracea HOM05D002250 ORTHO05D002393 1.6e-15 86.3 60 71.7
BraA03t09605Z Brassica rapa HOM05D002250 ORTHO05D002393 1.6e-15 86.3 60 71.7
BcaNung07047 Brassica carinata HOM05D002250 ORTHO05D002393 2.1e-15 85.9 59 72.9
A03p02440 Brassica napus HOM05D002250 ORTHO05D002393 7.8e-15 84.0 60 70.0
BcaB02g11438 Brassica carinata HOM05D002250 ORTHO05D092131 3.9e-14 81.6 41 87.8
AL6G15650 Arabidopsis lyrata HOM05D002250 ORTHO05D002393 1.9e-13 79.3 43 83.7
Carub.0006s0466 Capsella rubella HOM05D002250 ORTHO05D002393 1.9e-13 79.3 43 83.7
CARHR207510 Cardamine hirsuta HOM05D002250 ORTHO05D002393 1.9e-13 79.3 43 83.7
Thhalv10014023m.g Eutrema salsugineum HOM05D002250 ORTHO05D002393 4.3e-13 78.2 43 81.4
Sp6g37140 Schrenkiella parvula HOM05D002250 ORTHO05D002393 4.3e-13 78.2 41 85.4
AT5G05760 Arabidopsis thaliana HOM05D002250 ORTHO05D002393 5.6e-13 77.8 43 81.4
Aa31LG11G6770 Aethionema arabicum HOM05D002250 ORTHO05D002393 7.3e-13 77.4 43 81.4
THA.LOC104816556 Tarenaya hassleriana HOM05D002250 ORTHO05D002393 8.1e-12 73.9 43 79.1
Gohir.A10G233800 Gossypium hirsutum HOM05D002250 ORTHO05D002393 3.4e-10 68.6 55 58.2
Gohir.D10G246100 Gossypium hirsutum HOM05D002250 ORTHO05D002393 3.4e-10 68.6 55 58.2
Gorai.011G283800 Gossypium raimondii HOM05D002250 ORTHO05D002393 3.4e-10 68.6 55 58.2
MD01G1149000 Malus domestica HOM05D002250 ORTHO05D002393 3.4e-10 68.6 43 72.1
Duzib114G1007 Durio zibethinus HOM05D002250 ORTHO05D002393 4.4e-10 68.2 55 58.2
HanXRQChr12g0370551 Helianthus annuus HOM05D002250 ORTHO05D002393 5.8e-10 67.8 57 59.6
Phvul.008G225400 Phaseolus vulgaris HOM05D002250 ORTHO05D002393 7.6e-10 67.4 41 73.2
COL.COLO4_25632 Corchorus olitorius HOM05D002250 ORTHO05D002393 9.9e-10 67.0 43 69.8
Manes.07G127200 Manihot esculenta HOM05D002250 ORTHO05D002393 9.9e-10 67.0 41 73.2
Potri.010G191100 Populus trichocarpa HOM05D002250 ORTHO05D002393 9.9e-10 67.0 41 70.7
RcHm_v2.0_Chr1g0369761 Rosa chinensis HOM05D002250 ORTHO05D002393 9.9e-10 67.0 42 73.8
CANSAT56G0808 Cannabis sativa HOM05D002250 ORTHO05D002393 1.7e-09 66.2 43 69.8
Thecc.10G023000 Theobroma cacao HOM05D002250 ORTHO05D002393 2.2e-09 65.9 43 69.8
arahy.Tifrunner.gnm1.ann1.JV7TC8 Arachis hypogaea HOM05D002250 ORTHO05D002393 2.9e-09 65.5 41 73.2
arahy.Tifrunner.gnm1.ann1.SV3ZRB Arachis hypogaea HOM05D002250 ORTHO05D002393 2.9e-09 65.5 41 73.2
CiPaw.01G297000 Carya illinoinensis HOM05D002250 ORTHO05D002393 2.9e-09 65.5 43 67.4
VMungo0647G0800 Vigna mungo HOM05D002250 ORTHO05D002393 2.9e-09 65.5 41 70.7
MELO3C025172.2 Cucumis melo HOM05D002250 ORTHO05D002393 3.8e-09 65.1 55 52.7
Haze_17198 Corylus avellana HOM05D002250 ORTHO05D002393 4.9e-09 64.7 55 54.5
Lsat_1_v5_gn_8_12440 Lactuca sativa HOM05D002250 ORTHO05D002393 4.9e-09 64.7 57 57.9
Ciclev10031758m.g Citrus clementina HOM05D002250 ORTHO05D002393 6.4e-09 64.3 43 65.1
MSTRG.8319 Avicennia marina HOM05D002250 ORTHO05D002393 8.4e-09 63.9 57 57.9
CSS0005321 Camellia sinensis var. sinensis HOM05D002250 ORTHO05D002393 1.1e-08 63.5 43 65.1
FAN06G1269 Fragaria x ananassa HOM05D002250 ORTHO05D002393 1.1e-08 63.5 56 57.1
Peaxi162Scf01313g00119 Petunia axillaris HOM05D002250 ORTHO05D002393 1.1e-08 63.5 60 53.3
Rhsim09G0173400 Rhododendron simsii HOM05D002250 ORTHO05D002393 1.1e-08 63.5 57 54.4
vmacro10059 Vaccinium macrocarpon HOM05D002250 ORTHO05D002393 1.1e-08 63.5 57 54.4
Nitab4.5_0000802g0170 Nicotiana tabacum HOM05D002250 ORTHO05D002393 1.4e-08 63.2 43 67.4
Nitab4.5_0001346g0010 Nicotiana tabacum HOM05D002250 ORTHO05D002393 1.4e-08 63.2 43 67.4
Prupe.2G247700 Prunus persica HOM05D002250 ORTHO05D002393 1.4e-08 63.2 43 67.4
Cpa.g.sc19.208 Carica papaya HOM05D002250 ORTHO05D002393 1.9e-08 62.8 43 67.4
FvH4_7g24180 Fragaria vesca HOM05D002250 ORTHO05D002393 1.9e-08 62.8 42 66.7
FAN01G0378 Fragaria x ananassa HOM05D002250 ORTHO05D002393 1.9e-08 62.8 42 66.7
FAN03G0360 Fragaria x ananassa HOM05D002250 ORTHO05D002393 1.9e-08 62.8 42 66.7
FAN10G0698 Fragaria x ananassa HOM05D002250 ORTHO05D002393 1.9e-08 62.8 42 66.7
Lj8A70T41 Lonicera japonica HOM05D002250 ORTHO05D002393 1.9e-08 62.8 57 57.9
Sabra10G0147100 Salix brachista HOM05D002250 ORTHO05D002393 1.9e-08 62.8 90 42.2
Actinidia13923 Actinidia chinensis HOM05D002250 ORTHO05D002393 2.4e-08 62.4 43 62.8
Dinv34410 Davidia involucrata HOM05D002250 ORTHO05D002393 2.4e-08 62.4 57 54.4
Glyma.02G255700 Glycine max HOM05D002250 ORTHO05D002393 2.4e-08 62.4 41 68.3
Atru.chr12.6_Atru.chr12.7 Acer truncatum HOM05D002250 ORTHO05D002393 3.2e-08 62.0 43 65.1
ClCG07G004070 Citrullus lanatus HOM05D002250 ORTHO05D002393 3.2e-08 62.0 55 50.9
Sed0013961 Sechium edule HOM05D002250 ORTHO05D002393 3.2e-08 62.0 55 50.9
GSVIVG01032856001 Vitis vinifera HOM05D002250 ORTHO05D002393 3.2e-08 62.0 43 62.8
Dinv13744 Davidia involucrata HOM05D002250 ORTHO05D002393 4.1e-08 61.6 55 58.2
Dinv20972 Davidia involucrata HOM05D000895 ORTHO05D002393 5.4e-08 61.2 57 54.4
Dinv21033 Davidia involucrata HOM05D000895 ORTHO05D002393 5.4e-08 61.2 57 54.4
LjContig00357g0020435 Lotus japonicus HOM05D002250 ORTHO05D002393 7.1e-08 60.8 55 52.7
Sed0023487 Sechium edule HOM05D002250 ORTHO05D002393 7.1e-08 60.8 55 49.1
Migut.F01414 Erythranthe guttata HOM05D002250 ORTHO05D002393 9.2e-08 60.5 56 57.1
CsaV3_5G008990 Cucumis sativus L. HOM05D002250 ORTHO05D002393 1.2e-07 60.1 55 49.1
Glyma.U031123 Glycine max HOM05D002250 ORTHO05D002393 1.6e-07 59.7 41 65.9
TWI09G0841 Tripterygium wilfordii HOM05D002250 ORTHO05D002393 1.6e-07 59.7 41 70.7
DCAR_011799 Daucus carota HOM05D006949 ORTHO05D008621 2.1e-07 59.3 57 54.4
Nn2g11427 Nelumbo nucifera HOM05D002250 ORTHO05D002393 2.1e-07 59.3 57 52.6
TAR633G1402 Trochodendron aralioides HOM05D002250 ORTHO05D002393 2.1e-07 59.3 41 63.4
ATR0618G234 Amborella trichopoda HOM05D002250 ORTHO05D002393 2.7e-07 58.9 43 58.1
Sc11g0007210 Simmondsia chinensis HOM05D002250 ORTHO05D002393 2.7e-07 58.9 41 63.4
Solyc07g054140.3 Solanum lycopersicum HOM05D002250 ORTHO05D002393 2.7e-07 58.9 43 60.5
PGSC0003DMG400018386 Solanum tuberosum HOM05D002250 ORTHO05D002393 2.7e-07 58.9 43 60.5
MBI14_g09424_MAGBIO Magnolia biondii HOM05D002250 ORTHO05D002393 3.5e-07 58.5 55 52.7
MBI18_g28884_MAGBIO Magnolia biondii HOM05D002250 ORTHO05D002393 3.5e-07 58.5 55 52.7
PSO339G0485 Papaver somniferum HOM05D002250 ORTHO05D002393 3.5e-07 58.5 43 58.1
PSO801G0669 Papaver somniferum HOM05D002250 ORTHO05D002393 3.5e-07 58.5 43 58.1
Eucgr.G03043 Eucalyptus grandis HOM05D002250 ORTHO05D002393 4.6e-07 58.2 43 58.1
SalBow6G5206 Salvia bowleyana HOM05D002250 ORTHO05D002393 4.6e-07 58.2 57 49.1
Sopen07g028060 Solanum pennellii HOM05D002250 ORTHO05D002393 6.0e-07 57.8 43 60.5
CAN.G248.27 Capsicum annuum HOM05D002250 ORTHO05D002393 1.0e-06 57.0 60 50.0
Lalb_Chr17g0346691 Lupinus albus HOM05D002250 ORTHO05D002393 1.0e-06 57.0 41 58.5
Hund13839 Selenicereus undatus HOM05D002250 ORTHO05D002393 3.9e-06 55.1 55 45.5
Aqoxy4G02625 Aquilegia oxysepala HOM05D002250 ORTHO05D002393 8.6e-06 53.9 42 54.8


User provided reference genes

Program Settings