Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20430 Brassica carinata HOM05D000595 ORTHO05D004141 7.6e-149 530.4 257 100.0
BraA01t03266Z Brassica rapa HOM05D000595 ORTHO05D004141 1.4e-139 499.6 259 93.1
A01p31410 Brassica napus HOM05D000595 ORTHO05D004141 1.9e-139 499.2 259 93.1
BolC1t03957H Brassica oleracea HOM05D000595 ORTHO05D004141 2.3e-137 492.3 260 91.9
C01p40000 Brassica napus HOM05D000595 ORTHO05D004141 2.6e-136 488.8 259 91.9
Sp3g21340 Schrenkiella parvula HOM05D000595 ORTHO05D004141 4.5e-133 478.0 259 87.6
Thhalv10019990m.g Eutrema salsugineum HOM05D000595 ORTHO05D004141 1.0e-129 466.8 259 85.3
AL3G38380 Arabidopsis lyrata HOM05D000595 ORTHO05D004141 1.8e-129 466.1 259 85.3
AT3G23640 Arabidopsis thaliana HOM05D000595 ORTHO05D004141 6.7e-129 464.2 259 84.2
A01p31400 Brassica napus HOM05D000595 ORTHO05D004141 1.1e-128 463.4 259 84.9
C01p39990 Brassica napus HOM05D000595 ORTHO05D004141 1.1e-128 463.4 259 84.9
Sp3g21350 Schrenkiella parvula HOM05D000595 ORTHO05D004141 6.3e-127 457.6 259 83.4
Carub.0003s2390 Capsella rubella HOM05D000595 ORTHO05D004141 9.1e-126 453.8 257 83.7
Carub.0003s2391 Capsella rubella HOM05D000595 ORTHO05D004141 1.7e-124 449.5 257 82.1
BcaB04g20429 Brassica carinata HOM05D000595 ORTHO05D004141 2.5e-123 445.7 259 81.9
THA.LOC104822230 Tarenaya hassleriana HOM05D000595 ORTHO05D004141 1.2e-117 426.8 257 75.5
Aa31LG10G5270 Aethionema arabicum HOM05D000595 ORTHO05D004141 2.1e-114 416.0 259 76.1
QL02p060306 Quercus lobata HOM05D000595 ORTHO05D004141 2.2e-108 396.0 258 70.2
Cfa012657 Carpinus fangiana HOM05D000595 ORTHO05D004141 9.5e-107 390.6 260 69.6
Thecc.03G325300 Theobroma cacao HOM05D000595 ORTHO05D004141 1.2e-106 390.2 259 67.6
CiPaw.11G104000 Carya illinoinensis HOM05D000595 ORTHO05D004141 1.8e-105 386.3 259 68.3
TWI60G0525 Tripterygium wilfordii HOM05D000595 ORTHO05D004141 3.0e-105 385.6 254 68.9
Duzib116G0855 Durio zibethinus HOM05D000595 ORTHO05D004141 1.2e-104 383.6 254 68.1
PGR042G2013 Punica granatum HOM05D000595 ORTHO05D004141 1.5e-104 383.3 259 68.0
Gohir.D02G109400 Gossypium hirsutum HOM05D000595 ORTHO05D004141 2.0e-104 382.9 254 68.5
Gorai.005G124100 Gossypium raimondii HOM05D000595 ORTHO05D004141 2.6e-104 382.5 254 68.5
Prupe.5G018900 Prunus persica HOM05D000595 ORTHO05D004141 2.6e-104 382.5 259 66.8
Duzib116G0431 Durio zibethinus HOM05D000595 ORTHO05D004141 5.7e-104 381.3 254 67.7
MD00G1148100 Malus domestica HOM05D000595 ORTHO05D004141 9.8e-104 380.6 259 65.6
Gohir.A02G091200 Gossypium hirsutum HOM05D000595 ORTHO05D004141 8.3e-103 377.5 254 68.5
Atru.chr6.1509 Acer truncatum HOM05D000595 ORTHO05D004141 1.8e-102 376.3 259 67.2
Lj8A330G11 Lonicera japonica HOM05D000595 ORTHO05D004141 1.8e-102 376.3 254 68.5
Potri.001G129600 Populus trichocarpa HOM05D000595 ORTHO05D004141 1.8e-102 376.3 255 67.8
Nn1g02038 Nelumbo nucifera HOM05D000595 ORTHO05D004141 2.4e-102 375.9 259 67.6
COL.COLO4_24689 Corchorus olitorius HOM05D000595 ORTHO05D004141 4.1e-102 375.2 254 67.3
Eucgr.E01212 Eucalyptus grandis HOM05D000595 ORTHO05D004141 4.1e-102 375.2 254 66.5
RcHm_v2.0_Chr7g0213851 Rosa chinensis HOM05D000595 ORTHO05D004141 4.1e-102 375.2 254 66.5
Sabra01G0099900 Salix brachista HOM05D000595 ORTHO05D004141 4.1e-102 375.2 255 67.8
CANSAT21G1418 Cannabis sativa HOM05D000595 ORTHO05D004141 5.4e-102 374.8 259 64.1
Ciclev10000404m.g Citrus clementina HOM05D000595 ORTHO05D004141 5.4e-102 374.8 259 65.3
SalBow4G2071 Salvia bowleyana HOM05D000595 ORTHO05D004141 5.4e-102 374.8 259 66.0
FAN13G2264 Fragaria x ananassa HOM05D000595 ORTHO05D004141 2.0e-101 372.9 254 66.5
Lalb_Chr09g0325191 Lupinus albus HOM05D000595 ORTHO05D004141 4.5e-101 371.7 259 64.9
DCAR_004519 Daucus carota HOM05D000595 ORTHO05D004141 7.7e-101 370.9 254 66.9
Eucgr.E01209 Eucalyptus grandis HOM05D000595 ORTHO05D004141 7.7e-101 370.9 254 66.1
Ciclev10000152m.g Citrus clementina HOM05D000595 ORTHO05D004141 1.0e-100 370.5 259 64.5
MSTRG.24716 Avicennia marina HOM05D000595 ORTHO05D004141 1.3e-100 370.2 260 66.2
Nitab4.5_0000985g0070 Nicotiana tabacum HOM05D000595 ORTHO05D004141 2.3e-100 369.4 254 66.5
Solyc08g075530.3 Solanum lycopersicum HOM05D000595 ORTHO05D004141 2.3e-100 369.4 254 67.3
Sopen08g024190 Solanum pennellii HOM05D000595 ORTHO05D004141 2.3e-100 369.4 254 66.9
TAR629G2634 Trochodendron aralioides HOM05D000595 ORTHO05D004141 2.3e-100 369.4 254 66.9
FvH4_5g24150 Fragaria vesca HOM05D000595 ORTHO05D004141 6.6e-100 367.9 254 65.7
HanXRQChr17g0537211 Helianthus annuus HOM05D000595 ORTHO05D004141 6.6e-100 367.9 254 65.0
Sc07g0008260 Simmondsia chinensis HOM05D000595 ORTHO05D004141 3.3e-99 365.5 254 65.0
CSS0032199 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 5.6e-99 364.8 254 65.7
ECA246G1180 Erigeron canadensis HOM05D000595 ORTHO05D004141 7.3e-99 364.4 259 63.3
GSVIVG01022815001 Vitis vinifera HOM05D000595 ORTHO05D004141 9.5e-99 364.0 259 64.9
Lj2g0003822 Lotus japonicus HOM05D000595 ORTHO05D004141 1.2e-98 363.6 254 65.7
Migut.A00539 Erythranthe guttata HOM05D000595 ORTHO05D004141 1.6e-98 363.2 259 63.7
Ca_25085_v3 Cicer arietinum L. HOM05D000595 ORTHO05D004141 2.1e-98 362.8 260 65.8
Manes.15G187301 Manihot esculenta HOM05D000595 ORTHO05D004141 2.1e-98 362.8 254 65.0
Actinidia32782 Actinidia chinensis HOM05D000595 ORTHO05D004141 2.8e-98 362.5 254 65.7
Lsat_1_v5_gn_3_23561 Lactuca sativa HOM05D000595 ORTHO05D004141 2.8e-98 362.5 254 65.7
Nitab4.5_0000030g0360 Nicotiana tabacum HOM05D000595 ORTHO05D004141 2.8e-98 362.5 254 65.4
Psat2g142760 Pisum sativum HOM05D000595 ORTHO05D004141 2.8e-98 362.5 260 65.0
Hund14328 Selenicereus undatus HOM05D000595 ORTHO05D004141 3.6e-98 362.1 254 65.4
QL02p060347 Quercus lobata HOM05D000595 ORTHO05D004141 6.1e-98 361.3 303 58.1
Peaxi162Scf00053g00618 Petunia axillaris HOM05D000595 ORTHO05D004141 4.0e-97 358.6 254 64.6
Oeu042200.2 Olea europaea HOM05D000595 ORTHO05D004141 5.2e-97 358.2 250 66.0
CAN.G1731.4 Capsicum annuum HOM05D000595 ORTHO05D004141 2.6e-96 355.9 251 64.9
VMungo1215G0102 Vigna mungo HOM05D000595 ORTHO05D004141 7.5e-96 354.4 259 64.1
AUR62007422 Chenopodium quinoa HOM05D000595 ORTHO05D004141 9.8e-96 354.0 254 63.0
Medtr5g026610 Medicago truncatula HOM05D000595 ORTHO05D004141 9.8e-96 354.0 260 63.5
Oeu042195.1 Olea europaea HOM05D000595 ORTHO05D004141 9.8e-96 354.0 254 63.0
arahy.Tifrunner.gnm1.ann1.BJDV4A Arachis hypogaea HOM05D000595 ORTHO05D004141 1.3e-95 353.6 259 62.9
arahy.Tifrunner.gnm1.ann1.NQH3GN Arachis hypogaea HOM05D000595 ORTHO05D004141 1.3e-95 353.6 259 62.9
EL10Ac5g11905 Beta vulgaris HOM05D000595 ORTHO05D004141 2.2e-95 352.8 254 63.0
TPR.G17247 Trifolium pratense HOM05D000595 ORTHO05D004141 2.2e-95 352.8 260 63.1
Phvul.002G127000 Phaseolus vulgaris HOM05D000595 ORTHO05D004141 3.7e-95 352.1 259 62.9
AUR62027310 Chenopodium quinoa HOM05D000595 ORTHO05D004141 4.9e-95 351.7 254 62.2
Psat2g142920 Pisum sativum HOM05D000595 ORTHO05D004141 6.4e-95 351.3 257 63.4
TPR.G39643 Trifolium pratense HOM05D000595 ORTHO05D004141 1.1e-94 350.5 255 63.9
ClCG10G000900 Citrullus lanatus HOM05D000595 ORTHO05D004141 9.2e-94 347.4 254 61.8
PSO782G2105 Papaver somniferum HOM05D000595 ORTHO05D004141 1.2e-93 347.1 255 62.7
Aqoxy3G02180 Aquilegia oxysepala HOM05D000595 ORTHO05D004141 1.6e-93 346.7 255 62.4
Glyma.04G123900 Glycine max HOM05D000595 ORTHO05D004141 1.6e-93 346.7 254 63.0
ATR0829G165 Amborella trichopoda HOM05D000595 ORTHO05D004141 2.7e-93 345.9 254 62.2
Lalb_Chr16g0380651 Lupinus albus HOM05D000595 ORTHO05D004141 2.7e-93 345.9 259 60.2
SGA_v2.0_scaffold111G31354 Striga asiatica HOM05D000595 ORTHO05D004141 3.5e-93 345.5 282 57.8
MELO3C013786.2 Cucumis melo HOM05D000595 ORTHO05D004141 4.6e-93 345.1 254 62.2
Zm00001eb096920 Zea mays HOM05D000595 ORTHO05D004141 4.6e-93 345.1 254 64.2
Rhsim11G0034700 Rhododendron simsii HOM05D000595 ORTHO05D004141 5.9e-93 344.7 290 58.6
Os07g0420700 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D004141 1.0e-92 344.0 254 65.0
Migut.E01361 Erythranthe guttata HOM05D000595 ORTHO05D004141 1.7e-92 343.2 254 61.4
CsaV3_3G000980 Cucumis sativus L. HOM05D000595 ORTHO05D004141 3.0e-92 342.4 254 62.6
GSVIVG01036947001 Vitis vinifera HOM05D000595 ORTHO05D004141 8.6e-92 340.9 259 61.0
CDE01G0028 Ceratophyllum demersum HOM05D000595 ORTHO05D004141 9.5e-91 337.4 257 60.3
HPP92_020874 Vanilla planifolia HOM05D000595 ORTHO05D004141 1.2e-90 337.0 254 61.8
ECA246G0927 Erigeron canadensis HOM05D000595 ORTHO05D004141 1.8e-89 333.2 254 57.5
Sed0017541 Sechium edule HOM05D000595 ORTHO05D004141 2.3e-89 332.8 253 59.3
DCAR_004520 Daucus carota HOM05D000595 ORTHO05D004141 2.0e-88 329.7 254 61.0
Zm00001eb305980 Zea mays HOM05D000595 ORTHO05D004141 7.5e-88 327.8 254 61.0
PSO384G3949 Papaver somniferum HOM05D000595 ORTHO05D004141 2.9e-87 325.9 256 59.0
RcHm_v2.0_Chr7g0213921 Rosa chinensis HOM05D000595 ORTHO05D004141 2.4e-86 322.8 207 69.6
PSO384G3519 Papaver somniferum HOM05D000595 ORTHO05D004141 5.4e-86 321.6 250 58.4
Dinv37419 Davidia involucrata HOM05D000595 ORTHO05D004141 1.6e-82 310.1 256 57.0
vmacro00078 Vaccinium macrocarpon HOM05D000595 ORTHO05D004141 2.6e-80 302.8 202 68.8
Ciclev10011016m.g Citrus clementina HOM05D000595 ORTHO05D004141 2.3e-76 289.7 222 61.7
MBI04_g21145_MAGBIO Magnolia biondii HOM05D000595 ORTHO05D004141 1.2e-72 277.3 260 53.8
Os07g0421300 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D004141 1.9e-70 270.0 253 53.8
Pp3c16_2470 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.3e-68 263.8 232 51.3
Pp3c4_24030 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.1e-67 260.8 233 50.6
Pp3c5_4460 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.9e-67 260.0 231 53.2
Cpa.g.sc71.50 Carica papaya HOM05D000595 ORTHO05D004141 4.7e-66 255.4 165 70.3
Haze_07993 Corylus avellana HOM05D000595 ORTHO05D004141 8.1e-66 254.6 170 70.0
Pp3c13_11140 Physcomitrium patens HOM05D000595 ORTHO05D004141 8.9e-65 251.1 234 48.7
Pp3c3_9200 Physcomitrium patens HOM05D000595 ORTHO05D004141 4.4e-64 248.8 234 47.0
AagrBONN_evm.TU.Sc2ySwM_344.2687 Anthoceros agrestis HOM05D000595 ORTHO05D004141 7.6e-64 248.1 241 47.3
SMO116G0166 Selaginella moellendorffii HOM05D000595 ORTHO05D004141 3.8e-63 245.7 232 47.0
Mapoly0135s0001 Marchantia polymorpha HOM05D000595 ORTHO05D004141 1.6e-61 240.4 231 47.2
TPR.G17274 Trifolium pratense HOM05D000595 ORTHO05D004141 2.2e-55 219.9 201 54.2
HPP92_028112 Vanilla planifolia HOM05D000595 ORTHO05D004141 3.8e-55 219.2 245 45.3
Lj8A331G39 Lonicera japonica HOM05D000595 ORTHO05D004141 3.2e-54 216.1 232 50.9
CARHR000110 Cardamine hirsuta HOM05D000595 ORTHO05D004141 1.8e-52 210.3 112 83.9
MBI04_g21144_MAGBIO Magnolia biondii HOM05D000595 ORTHO05D004141 2.3e-52 209.9 173 59.0
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 9.6e-51 204.5 146 65.8
Cfa012656 Carpinus fangiana HOM05D000595 ORTHO05D004141 1.1e-41 174.5 120 65.8
HPP92_024265 Vanilla planifolia HOM05D000595 ORTHO05D004141 6.9e-33 145.2 100 64.0
Thecc.05G000100 Theobroma cacao HOM05D000595 ORTHO05D004141 2.2e-31 140.2 89 70.8
FAN18G1127 Fragaria x ananassa HOM05D000595 ORTHO05D004141 5.5e-30 135.6 85 68.2
Cpa.g.sc71.52 Carica papaya HOM05D000595 ORTHO05D004141 3.6e-29 132.9 86 69.8
Mapoly0059s0108 Marchantia polymorpha HOM05D000595 ORTHO05D004141 1.5e-24 117.5 111 46.8
Mapoly0633s0002 Marchantia polymorpha HOM05D000595 ORTHO05D004141 1.4e-17 94.4 87 43.7
Cc08_g05410 Coffea canephora HOM05D000595 ORTHO05D004141 5.7e-11 72.4 61 49.2
Haze_07994 Corylus avellana HOM05D000595 ORTHO05D004141 4.8e-10 69.3 52 59.6
vmacro00079 Vaccinium macrocarpon HOM05D000595 ORTHO05D004141 7.0e-09 65.5 54 53.7
GSVIVG01013642001 Vitis vinifera HOM05D000595 ORTHO05D004141 5.5e-06 55.8 51 49.0


User provided reference genes

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