Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 3.3e-190 668.3 359 100.0
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 2.5e-166 589.0 364 89.3
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 2.5e-166 589.0 364 89.3
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.1e-164 583.6 363 88.4
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 9.0e-164 580.5 363 88.2
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 2.4e-161 572.4 361 87.0
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 7.1e-161 570.9 361 86.7
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 3.9e-159 565.1 362 85.4
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 5.1e-159 564.7 367 84.5
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.9e-158 562.8 361 84.8
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.3e-157 560.1 367 84.7
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.3e-157 560.1 367 84.7
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.6e-157 559.7 366 85.2
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 3.1e-156 555.4 361 85.0
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 4.0e-156 555.1 361 83.9
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 4.5e-155 551.6 361 84.2
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 4.5e-155 551.6 361 84.2
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.3e-151 540.0 366 82.2
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 4.1e-148 528.5 367 79.8
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.1e-145 520.4 367 79.0
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.9e-145 519.6 347 83.3
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 6.1e-144 514.6 361 79.2
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 3.7e-141 505.4 367 77.1
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 5.3e-124 448.4 334 75.7
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.7e-109 400.2 371 60.6
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.5e-105 387.1 374 58.8
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 9.2e-84 314.7 368 50.0
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.2e-83 314.3 368 48.1
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.1e-83 313.5 378 47.4
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 2.3e-82 310.1 371 49.3
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.9e-82 309.3 378 47.4
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 4.3e-81 305.8 370 49.2
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 4.3e-81 305.8 370 49.2
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 4.3e-81 305.8 369 51.2
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 7.3e-81 305.1 369 50.9
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 2.8e-80 303.1 370 49.5
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 4.7e-80 302.4 364 49.2
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 6.2e-80 302.0 365 48.8
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.4e-79 300.8 367 48.0
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.1e-79 299.7 368 48.4
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 5.2e-79 298.9 372 47.8
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.5e-78 297.4 372 47.8
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.0e-78 297.0 368 48.1
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.0e-78 297.0 368 48.4
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.6e-78 296.6 372 47.6
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.6e-78 296.6 372 47.6
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 5.8e-78 295.4 323 51.1
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 9.9e-78 294.7 368 48.1
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 9.9e-78 294.7 372 48.9
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 2.2e-77 293.5 368 49.2
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 8.3e-77 291.6 379 47.0
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.1e-76 291.2 366 47.8
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.4e-76 290.8 377 45.4
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.4e-76 290.0 375 46.1
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.1e-76 289.3 371 47.7
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 9.2e-76 288.1 375 46.1
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 2.1e-75 287.0 329 50.5
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 3.5e-75 286.2 365 46.8
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 4.6e-75 285.8 371 47.4
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.0e-75 285.4 371 46.1
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 7.8e-75 285.0 365 46.3
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.0e-74 284.6 321 51.7
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.0e-74 284.6 373 47.5
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.3e-74 284.3 364 46.4
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 5.1e-74 282.3 352 46.6
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.1e-73 281.2 375 44.5
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.5e-73 280.8 365 44.1
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 4.3e-73 279.3 371 47.2
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 4.7e-72 275.8 366 46.2
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 4.7e-72 275.8 353 46.5
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 3.1e-71 273.1 333 48.0
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 3.1e-71 273.1 324 50.9
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.0e-71 272.7 371 45.3
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.2e-70 271.2 370 46.2
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.5e-70 270.8 372 44.1
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 2.0e-70 270.4 351 46.4
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 2.0e-70 270.4 365 41.9
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 2.6e-70 270.0 365 44.4
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 2.6e-70 270.0 353 45.9
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 3.4e-70 269.6 365 44.1
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.4e-70 269.2 367 46.0
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 4.4e-70 269.2 370 45.1
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.4e-70 269.2 371 44.5
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 2.2e-69 266.9 374 44.4
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.9e-69 266.5 409 43.5
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 1.1e-68 264.6 369 43.9
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 7.1e-68 261.9 364 45.1
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.2e-67 261.2 306 48.0
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 2.7e-67 260.0 358 44.4
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 6.0e-67 258.8 351 45.6
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 6.0e-67 258.8 369 43.6
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.7e-66 257.3 374 42.5
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 5.1e-66 255.8 351 45.3
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 8.7e-66 255.0 372 43.0
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 8.7e-66 255.0 369 42.5
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.5e-65 254.2 360 44.7
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 4.3e-65 252.7 377 42.7
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 5.6e-65 252.3 369 45.0
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 7.3e-65 251.9 327 45.3
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.6e-64 250.8 365 43.3
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 2.1e-64 250.4 369 44.2
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 4.0e-63 246.1 369 45.3
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 5.3e-63 245.7 358 38.3
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 9.0e-63 245.0 371 45.3
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 2.0e-62 243.8 365 41.6
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 5.8e-62 242.3 373 41.0
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 7.6e-62 241.9 365 42.2
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 1.3e-61 241.1 365 41.9
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.7e-61 240.7 371 42.0
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 6.4e-61 238.8 370 42.2
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 6.4e-61 238.8 366 42.1
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 7.8e-59 231.9 370 40.0
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 8.7e-58 228.4 391 39.4
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.5e-57 227.6 348 39.1
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 3.3e-57 226.5 305 43.3
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 1.6e-56 224.2 319 42.9
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 4.8e-56 222.6 375 42.4
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.1e-55 221.5 348 42.5
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 6.9e-55 218.8 372 39.8
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.2e-54 218.0 324 44.1
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.7e-53 214.2 344 39.0
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 4.9e-53 212.6 372 39.2
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 8.4e-53 211.8 328 40.2
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 6.0e-51 205.7 373 38.3
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.4e-47 193.7 373 38.9
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 9.0e-47 191.8 332 38.6
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 2.9e-45 186.8 280 43.2
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 2.5e-44 183.7 261 42.5
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.8e-42 177.6 277 39.7
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 4.8e-40 169.5 197 48.2
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 4.1e-31 139.8 377 33.4
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 1.3e-29 134.8 129 56.6
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 2.7e-27 127.1 130 52.3
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 6.1e-27 125.9 386 31.3
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.9e-18 96.7 136 37.5
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 2.6e-17 94.0 157 39.5
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.7e-17 92.8 138 34.8
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 3.7e-16 90.1 348 26.7
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.4e-15 87.4 125 37.6
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.4e-15 87.4 369 24.9
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 3.1e-15 87.0 244 30.7
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.1e-15 86.7 130 36.9
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.0e-14 84.3 379 25.3
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 3.8e-13 80.1 99 48.5
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 5.0e-13 79.7 197 31.0
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 3.2e-12 77.0 100 40.0
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 8.0e-11 72.4 129 32.6
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 7.4e-09 65.9 235 25.5
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 3.5e-06 57.0 61 44.3


User provided reference genes

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