Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20397 Brassica carinata HOM05D005430 ORTHO05D007814 1.9e-80 302.4 145 100.0
A01p31010 Brassica napus HOM05D005430 ORTHO05D007814 2.6e-77 292.0 145 95.2
BraA01t03227Z Brassica rapa HOM05D005430 ORTHO05D007814 2.6e-77 292.0 145 95.2
Sp3g21900 Schrenkiella parvula HOM05D005430 ORTHO05D007814 2.1e-71 272.3 145 89.0
C01p39510 Brassica napus HOM05D005430 ORTHO05D007814 1.5e-69 266.2 135 93.3
BolC1t03901H Brassica oleracea HOM05D005430 ORTHO05D007814 4.4e-69 264.6 135 92.6
Thhalv10003022m.g Eutrema salsugineum HOM05D005430 ORTHO05D007814 7.8e-66 253.8 147 81.0
AL3G39310 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 3.0e-65 251.9 144 81.9
AT3G24060 Arabidopsis thaliana HOM05D005430 ORTHO05D007814 5.0e-65 251.1 144 81.2
AL8G20530 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 2.0e-61 239.2 126 86.5
CARHR100160 Cardamine hirsuta HOM05D005430 ORTHO05D007814 1.3e-60 236.5 149 76.5
Carub.0003s2446 Capsella rubella HOM05D005430 ORTHO05D007814 2.4e-59 232.3 123 84.6
THA.LOC104821619 Tarenaya hassleriana HOM05D005430 ORTHO05D007814 1.7e-52 209.5 140 69.3
RcHm_v2.0_Chr4g0396841 Rosa chinensis HOM05D005430 ORTHO05D007814 5.4e-43 177.9 143 58.7
Ciclev10006174m.g Citrus clementina HOM05D005430 ORTHO05D007814 2.7e-42 175.6 143 59.4
Potri.003G175200 Populus trichocarpa HOM05D005430 ORTHO05D007814 6.0e-42 174.5 143 58.0
Cfa014874 Carpinus fangiana HOM05D005430 ORTHO05D007814 1.7e-41 172.9 144 56.2
Duzib212G0862 Durio zibethinus HOM05D005430 ORTHO05D007814 1.7e-41 172.9 144 59.0
Eucgr.H00103 Eucalyptus grandis HOM05D005430 ORTHO05D007814 1.7e-41 172.9 146 57.5
FvH4_4g05670 Fragaria vesca HOM05D005430 ORTHO05D007814 1.7e-41 172.9 142 57.7
Prupe.1G058400 Prunus persica HOM05D005430 ORTHO05D007814 1.7e-41 172.9 141 58.2
Dinv38286 Davidia involucrata HOM05D005430 ORTHO05D007814 2.3e-41 172.6 114 65.8
MD13G1228600 Malus domestica HOM05D005430 ORTHO05D007814 2.3e-41 172.6 145 58.6
FAN17G1087 Fragaria x ananassa HOM05D005430 ORTHO05D007814 3.0e-41 172.2 142 58.5
MD16G1234100 Malus domestica HOM05D005430 ORTHO05D007814 3.0e-41 172.2 145 57.9
Thecc.04G212700 Theobroma cacao HOM05D005430 ORTHO05D007814 3.0e-41 172.2 144 59.0
FAN07G2372 Fragaria x ananassa HOM05D005430 ORTHO05D007814 6.6e-41 171.0 123 63.4
Sabra03G0128400 Salix brachista HOM05D005430 ORTHO05D007814 6.6e-41 171.0 142 58.5
CiPaw.01G204600 Carya illinoinensis HOM05D005430 ORTHO05D007814 8.7e-41 170.6 114 65.8
Cpa.g.sc59.85 Carica papaya HOM05D005430 ORTHO05D007814 1.1e-40 170.2 144 59.0
Manes.03G153100 Manihot esculenta HOM05D005430 ORTHO05D007814 1.1e-40 170.2 145 59.3
Gohir.A10G120900 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.5e-40 169.9 144 58.3
Gohir.D10G145400 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.5e-40 169.9 144 58.3
Gorai.011G162600 Gossypium raimondii HOM05D005430 ORTHO05D007814 1.5e-40 169.9 144 58.3
CANSAT78G1772 Cannabis sativa HOM05D005430 ORTHO05D007814 1.9e-40 169.5 149 55.7
CANSAT78G2053 Cannabis sativa HOM05D005430 ORTHO05D007814 1.9e-40 169.5 149 55.7
FAN12G0934 Fragaria x ananassa HOM05D005430 ORTHO05D007814 3.3e-40 168.7 141 57.4
FAN22G2342 Fragaria x ananassa HOM05D005430 ORTHO05D007814 4.3e-40 168.3 123 61.8
Atru.chr4.1803 Acer truncatum HOM05D005430 ORTHO05D007814 5.6e-40 167.9 150 56.7
Haze_11548 Corylus avellana HOM05D005430 ORTHO05D007814 7.3e-40 167.5 148 54.1
Potri.001G053100 Populus trichocarpa HOM05D005430 ORTHO05D007814 1.3e-39 166.8 147 57.8
Lsat_1_v5_gn_6_62741 Lactuca sativa HOM05D005430 ORTHO05D007814 1.6e-39 166.4 112 59.8
Sed0023963 Sechium edule HOM05D005430 ORTHO05D007814 1.6e-39 166.4 143 57.3
Phvul.006G128700 Phaseolus vulgaris HOM05D005430 ORTHO05D007814 2.8e-39 165.6 144 57.6
QL06p023021 Quercus lobata HOM05D005430 ORTHO05D007814 3.6e-39 165.2 121 62.8
COL.COLO4_34091 Corchorus olitorius HOM05D005430 ORTHO05D007814 4.8e-39 164.9 123 62.6
Glyma.15G129600 Glycine max HOM05D005430 ORTHO05D007814 6.2e-39 164.5 144 56.9
VMungo0540G1768 Vigna mungo HOM05D005430 ORTHO05D007814 8.1e-39 164.1 144 56.2
QL11p023894 Quercus lobata HOM05D005430 ORTHO05D007814 1.4e-38 163.3 121 62.0
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 1.4e-38 163.3 136 58.1
QL12p006673 Quercus lobata HOM05D005430 ORTHO05D007814 1.8e-38 162.9 145 54.5
Manes.15G049100 Manihot esculenta HOM05D005430 ORTHO05D007814 2.4e-38 162.5 145 55.2
Sed0027066 Sechium edule HOM05D005430 ORTHO05D007814 2.4e-38 162.5 145 55.9
MELO3C023093.2 Cucumis melo HOM05D005430 ORTHO05D007814 3.1e-38 162.2 138 58.0
QL05p063758 Quercus lobata HOM05D005430 ORTHO05D007814 5.3e-38 161.4 123 59.3
Rhsim06G0013100 Rhododendron simsii HOM05D005430 ORTHO05D007814 6.9e-38 161.0 109 64.2
CSS0041852 Camellia sinensis var. sinensis HOM05D005430 ORTHO05D007814 9.0e-38 160.6 143 54.5
CsaV3_2G012000 Cucumis sativus L. HOM05D005430 ORTHO05D007814 9.0e-38 160.6 120 62.5
Glyma.09G023500 Glycine max HOM05D005430 ORTHO05D007814 1.2e-37 160.2 144 55.6
Hma1.2p1_0903F.1_g235070 Hydrangea macrophylla HOM05D005430 ORTHO05D007814 1.2e-37 160.2 143 50.3
TWI73G0050 Tripterygium wilfordii HOM05D005430 ORTHO05D007814 1.2e-37 160.2 143 56.6
QL05p063717 Quercus lobata HOM05D005430 ORTHO05D007814 2.0e-37 159.5 112 60.7
Medtr2g030100 Medicago truncatula HOM05D005430 ORTHO05D007814 7.6e-37 157.5 145 53.8
Sed0021677 Sechium edule HOM05D005430 ORTHO05D007814 1.3e-36 156.8 141 54.6
HanXRQChr07g0185851 Helianthus annuus HOM05D005430 ORTHO05D007814 2.2e-36 156.0 146 52.7
Psat1g167840 Pisum sativum HOM05D005430 ORTHO05D007814 2.9e-36 155.6 145 51.7
TPR.G26323 Trifolium pratense HOM05D005430 ORTHO05D007814 2.9e-36 155.6 130 56.9
MELO3C006342.2 Cucumis melo HOM05D005430 ORTHO05D007814 4.9e-36 154.8 145 53.1
CsaV3_3G011340 Cucumis sativus L. HOM05D005430 ORTHO05D007814 4.9e-36 154.8 116 60.3
Sc13g0002820 Simmondsia chinensis HOM05D005430 ORTHO05D007814 6.4e-36 154.5 139 53.2
Medtr2g030080 Medicago truncatula HOM05D005430 ORTHO05D007814 1.4e-35 153.3 129 55.8
GSVIVG01029041001 Vitis vinifera HOM05D005430 ORTHO05D007814 1.9e-35 152.9 143 52.4
TPR.G26356 Trifolium pratense HOM05D005430 ORTHO05D007814 2.4e-35 152.5 145 52.4
Lalb_Chr15g0088741 Lupinus albus HOM05D005430 ORTHO05D007814 4.2e-35 151.8 145 53.1
arahy.Tifrunner.gnm1.ann1.D09HZI Arachis hypogaea HOM05D005430 ORTHO05D007814 1.2e-34 150.2 128 53.9
ClCG05G003630 Citrullus lanatus HOM05D005430 ORTHO05D007814 1.2e-34 150.2 111 60.4
Sed0020493 Sechium edule HOM05D005430 ORTHO05D007814 1.2e-34 150.2 137 53.3
Oeu041168.1 Olea europaea HOM05D005430 ORTHO05D007814 1.3e-33 146.7 138 52.9
CAN.G706.30 Capsicum annuum HOM05D005430 ORTHO05D007814 2.3e-33 146.0 150 50.0
PGSC0003DMG400016877 Solanum tuberosum HOM05D005430 ORTHO05D007814 3.9e-33 145.2 113 54.9
Sopen12g032930 Solanum pennellii HOM05D005430 ORTHO05D007814 5.1e-33 144.8 147 48.3
Solyc12g098110.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 6.7e-33 144.4 147 49.0
SalBow3G0850 Salvia bowleyana HOM05D005430 ORTHO05D007814 8.7e-33 144.1 118 53.4
HanXRQChr02g0059521 Helianthus annuus HOM05D005430 ORTHO05D007814 1.5e-32 143.3 146 45.9
Oeu033089.1 Olea europaea HOM05D005430 ORTHO05D007814 1.5e-32 143.3 141 52.5
CAN.G1745.2 Capsicum annuum HOM05D005430 ORTHO05D007814 7.4e-32 141.0 138 46.4
Migut.N00331 Erythranthe guttata HOM05D005430 ORTHO05D007814 2.1e-31 139.4 146 46.6
SGA_v2.0_scaffold2G00855 Striga asiatica HOM05D005430 ORTHO05D007814 6.2e-31 137.9 114 57.0
Solyc09g091360.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 1.1e-30 137.1 144 45.1
Nitab4.5_0008614g0010 Nicotiana tabacum HOM05D005430 ORTHO05D007814 4.6e-26 121.7 121 49.6
vmacro22822 Vaccinium macrocarpon HOM05D005430 ORTHO05D007814 4.6e-26 121.7 113 54.9
SHI00018 Sapria himalayana HOM05D005430 ORTHO05D007814 2.1e-23 112.8 126 43.7
EL10Ac3g06777 Beta vulgaris HOM05D005430 ORTHO05D007814 2.8e-23 112.5 98 52.0
Actinidia25081 Actinidia chinensis HOM05D005430 ORTHO05D007814 3.7e-23 112.1 109 50.5
Thecc.04G213200 Theobroma cacao HOM05D005430 ORTHO05D007814 1.5e-16 90.1 149 34.9
Cpa.g.sc59.81 Carica papaya HOM05D005430 ORTHO05D000119 2.5e-16 89.4 137 33.6
Duzib212G0436 Durio zibethinus HOM05D005430 ORTHO05D007814 2.8e-15 85.9 150 34.7
Gorai.006G055200 Gossypium raimondii HOM05D005430 ORTHO05D007814 6.3e-15 84.7 120 39.2
COL.COLO4_05733 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.1e-14 84.0 125 34.4
Gohir.A09G053500 Gossypium hirsutum HOM05D005430 ORTHO05D000119 1.1e-14 84.0 120 39.2
Gohir.D09G053032 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.4e-14 83.6 120 39.2
Migut.G00604 Erythranthe guttata HOM05D005430 ORTHO05D007814 3.1e-14 82.4 111 36.0
Migut.G00603 Erythranthe guttata HOM05D005430 ORTHO05D007814 9.0e-14 80.9 112 34.8
Gohir.A09G053300 Gossypium hirsutum HOM05D005430 ORTHO05D007814 9.0e-14 80.9 149 34.9
Gohir.D09G053020 Gossypium hirsutum HOM05D005430 ORTHO05D007814 9.0e-14 80.9 149 35.6
Gorai.006G055400 Gossypium raimondii HOM05D005430 ORTHO05D007814 9.0e-14 80.9 149 35.6
COL.COLO4_34097 Corchorus olitorius HOM05D005430 ORTHO05D007814 2.6e-13 79.3 148 32.4
Thecc.04G213100 Theobroma cacao HOM05D005430 ORTHO05D007814 2.6e-13 79.3 147 31.3
COL.COLO4_05736 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.4e-13 79.0 110 36.4
Cpa.g.sc12.57 Carica papaya HOM05D005430 ORTHO05D007814 5.9e-13 78.2 113 36.3
COL.COLO4_34098 Corchorus olitorius HOM05D000048 ORTHO05D000207 5.9e-13 78.2 116 36.2
Potri.001G053300 Populus trichocarpa HOM05D005430 ORTHO05D007814 5.9e-13 78.2 143 32.2
RcHm_v2.0_Chr4g0396551 Rosa chinensis HOM05D005430 ORTHO05D000119 5.9e-13 78.2 144 29.2
SalBow2G0067 Salvia bowleyana HOM05D005430 ORTHO05D000119 7.7e-13 77.8 147 32.0
Nitab4.5_0003185g0070 Nicotiana tabacum HOM05D005430 ORTHO05D007814 1.7e-12 76.6 77 48.1
Oeu024845.1 Olea europaea HOM05D005430 ORTHO05D007814 1.7e-12 76.6 111 34.2
Migut.H02432 Erythranthe guttata HOM05D005430 ORTHO05D000119 2.9e-12 75.9 111 35.1
COL.COLO4_05734 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.8e-12 75.5 119 32.8
COL.COLO4_34096 Corchorus olitorius HOM05D005430 ORTHO05D007814 5.0e-12 75.1 128 29.7
Manes.04G148500 Manihot esculenta HOM05D000256 ORTHO05D000119 1.4e-11 73.6 127 32.3
Hma1.2p1_1359F.1_g278050 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.2e-11 72.0 116 36.2
Rhsim09G0049800 Rhododendron simsii HOM05D000256 ORTHO05D000119 5.5e-11 71.6 109 33.9
Thecc.04G215700 Theobroma cacao HOM05D005430 ORTHO05D007814 5.5e-11 71.6 139 30.2
Migut.J01121 Erythranthe guttata HOM05D000256 ORTHO05D000119 9.4e-11 70.9 119 31.9
SGA_v2.0_scaffold57G20177 Striga asiatica HOM05D005430 ORTHO05D000119 9.4e-11 70.9 114 31.6
Gorai.009G341000 Gossypium raimondii HOM05D005430 ORTHO05D007814 1.6e-10 70.1 140 30.7
Potri.003G201300 Populus trichocarpa HOM05D005430 ORTHO05D000119 2.1e-10 69.7 111 31.5
Peaxi162Scf01007g00016 Petunia axillaris HOM05D000256 ORTHO05D000119 2.7e-10 69.3 141 34.0
Gohir.D05G318200 Gossypium hirsutum HOM05D005430 ORTHO05D007814 3.6e-10 68.9 140 30.0
COL.COLO4_05731 Corchorus olitorius HOM05D005430 ORTHO05D007814 4.6e-10 68.6 150 29.3
PGR083G1564 Punica granatum HOM05D005430 ORTHO05D007814 7.9e-10 67.8 92 38.0
Rhsim03G0222400 Rhododendron simsii HOM05D005430 ORTHO05D007814 1.0e-09 67.4 142 28.2
Eucgr.H00099 Eucalyptus grandis HOM05D010815 ORTHO05D011855 2.3e-09 66.2 111 36.0
Duzib151G1037 Durio zibethinus HOM05D005430 ORTHO05D007814 3.0e-09 65.9 110 30.9
Migut.H02436 Erythranthe guttata HOM05D000256 ORTHO05D000119 8.8e-09 64.3 103 32.0
Hma1.2p1_0146F.1_g065570 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 8.8e-09 64.3 116 33.6
Migut.C00644 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.0e-08 63.2 135 31.1
Hma1.2p1_0146F.1_g065590 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.0e-08 63.2 150 30.0
Hma1.2p1_0785F.1_g217560 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.0e-08 63.2 138 29.0
Migut.H02457 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.5e-08 62.8 111 31.5
Potri.010G008300 Populus trichocarpa HOM05D000256 ORTHO05D000119 2.5e-08 62.8 117 28.2
Hma1.2p1_0170F.1_g075380 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 4.3e-08 62.0 143 30.1
Hma1.2p1_1359F.1_g278080 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 5.7e-08 61.6 148 27.7
Hma1.2p1_0903F.1_g234940 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 9.7e-08 60.8 148 27.7
Ciclev10023991m.g Citrus clementina HOM05D000256 ORTHO05D000119 1.3e-07 60.5 138 31.2
SalBow2G2503 Salvia bowleyana HOM05D005430 ORTHO05D000119 1.3e-07 60.5 120 30.8
Ciclev10023262m.g Citrus clementina HOM05D005430 ORTHO05D007814 1.7e-07 60.1 83 30.1
Migut.F01972 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.7e-07 60.1 140 28.6
TWI14G0081 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 1.7e-07 60.1 120 29.2
Hma1.2p1_0453F.1_g156140 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.2e-07 59.7 139 27.3
unitig_699.g19174 Utricularia gibba HOM05D000256 ORTHO05D000119 2.2e-07 59.7 90 36.7
Migut.F01940 Erythranthe guttata HOM05D000256 ORTHO05D000119 4.8e-07 58.5 128 31.2
COL.COLO4_17920 Corchorus olitorius HOM05D000256 ORTHO05D000119 6.3e-07 58.2 136 26.5
CANSAT35G0230 Cannabis sativa HOM05D000256 ORTHO05D000119 8.2e-07 57.8 93 32.3
Carub.0002s1136 Capsella rubella HOM05D000256 ORTHO05D000119 1.1e-06 57.4 96 32.3
Gohir.A05G316800 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.1e-06 57.4 140 29.3
SGA_v2.0_scaffold2G01340 Striga asiatica HOM05D000256 ORTHO05D000119 1.1e-06 57.4 134 28.4
CAN.G1648.6 Capsicum annuum HOM05D000256 ORTHO05D000119 1.8e-06 56.6 116 32.8
COL.COLO4_05730 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.8e-06 56.6 118 28.0
Lalb_Chr07g0181531 Lupinus albus HOM05D000256 ORTHO05D000119 2.4e-06 56.2 99 29.3
PSO724G0195 Papaver somniferum HOM05D000256 ORTHO05D000119 2.4e-06 56.2 81 35.8
Rhsim09G0046300 Rhododendron simsii HOM05D000256 ORTHO05D000119 2.4e-06 56.2 146 30.1
RhsimUnG0178100 Rhododendron simsii HOM05D000256 ORTHO05D000119 2.4e-06 56.2 146 30.1
RhsimUnG0182200 Rhododendron simsii HOM05D000256 ORTHO05D000119 2.4e-06 56.2 146 30.1
FAN17G1524 Fragaria x ananassa HOM05D008849 ORTHO05D010556 4.1e-06 55.5 107 32.7
Migut.N00479 Erythranthe guttata HOM05D000256 ORTHO05D000119 5.3e-06 55.1 98 33.7
Hma1.2p1_2329F.1_g320010 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 6.9e-06 54.7 145 26.2


User provided reference genes

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