Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 0.0e+00 1102.0 631 100.0
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 2.9e-210 735.7 736 69.8
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 1.1e-196 690.6 717 67.6
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 4.0e-191 672.2 741 64.9
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 3.0e-186 656.0 755 60.7
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.6e-184 650.2 692 67.2
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 2.6e-182 642.9 582 72.9
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 9.9e-182 641.0 739 64.1
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 4.9e-181 638.6 723 64.2
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 6.0e-179 631.7 742 63.2
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 8.6e-178 627.9 716 64.4
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 2.1e-176 623.2 728 63.3
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 4.0e-175 619.0 735 61.6
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 2.9e-173 612.8 700 65.3
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 6.0e-171 605.1 692 64.2
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 9.0e-167 591.3 666 65.0
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 7.1e-164 581.6 741 59.2
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 6.0e-147 525.4 647 63.2
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 8.7e-146 521.5 714 57.7
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 3.7e-144 516.2 692 57.7
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 4.0e-143 512.7 752 50.3
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.4e-140 504.2 745 50.9
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 1.9e-124 450.7 530 64.2
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 2.3e-122 443.7 527 63.6
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.7e-101 374.4 378 59.5
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 5.0e-101 372.9 423 56.7
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 7.2e-100 369.0 404 59.9
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 6.1e-99 365.9 375 62.4
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 8.0e-99 365.5 516 47.7
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.8e-98 364.4 421 59.1
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 4.8e-96 356.3 519 47.0
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 1.1e-95 355.1 457 51.9
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 5.4e-95 352.8 435 53.8
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 9.1e-95 352.1 381 55.9
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 3.5e-94 350.1 753 44.1
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 5.9e-94 349.4 608 45.1
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 5.0e-93 346.3 573 44.2
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 1.1e-92 345.1 759 40.1
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 5.5e-92 342.8 577 43.5
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 7.2e-92 342.4 690 41.6
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 9.5e-92 342.0 443 50.1
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.1e-91 340.9 528 46.0
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 4.7e-91 339.7 766 40.5
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 6.1e-91 339.3 739 42.5
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 8.0e-91 339.0 377 57.8
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.4e-90 338.2 752 38.2
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 1.4e-90 338.2 640 40.3
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.8e-90 337.8 780 39.4
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.0e-90 336.7 751 38.9
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 8.9e-90 335.5 451 55.9
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 8.9e-90 335.5 597 42.2
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.6e-89 334.0 609 43.5
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 1.3e-88 331.6 799 40.9
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 3.7e-88 330.1 363 54.5
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.4e-87 327.4 371 52.8
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 1.6e-86 324.7 596 41.6
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 2.7e-86 323.9 633 39.8
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 3.5e-86 323.6 622 41.0
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 4.5e-86 323.2 356 53.9
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.3e-85 320.9 595 40.8
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 2.9e-85 320.5 621 41.2
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 5.0e-85 319.7 359 53.5
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.6e-85 319.3 756 40.6
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 1.1e-84 318.5 375 52.0
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 1.1e-84 318.5 604 41.2
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.5e-84 317.4 359 53.2
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 4.3e-84 316.6 529 47.6
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.6e-83 314.7 723 38.9
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.8e-82 311.2 361 50.7
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.0e-82 310.1 605 40.2
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 5.2e-82 309.7 630 44.6
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 6.8e-82 309.3 763 40.2
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 3.4e-81 307.0 403 56.1
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 2.2e-80 304.3 651 37.9
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-80 304.3 764 37.2
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 2.9e-80 303.9 644 43.5
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 3.7e-80 303.5 380 50.5
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.1e-79 302.0 765 37.0
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 1.1e-79 302.0 450 47.1
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 1.9e-79 301.2 382 56.5
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 2.4e-79 300.8 368 59.0
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 5.4e-79 299.7 617 39.1
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 7.0e-79 299.3 377 56.0
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 9.2e-79 298.9 371 49.9
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 2.0e-78 297.7 366 60.1
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 3.5e-78 297.0 540 47.2
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 4.6e-78 296.6 776 36.6
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 6.0e-78 296.2 349 54.2
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 7.8e-78 295.8 547 41.3
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 7.8e-78 295.8 538 45.9
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 7.8e-78 295.8 397 53.7
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-77 294.7 743 37.8
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 3.0e-77 293.9 370 57.3
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 5.0e-77 293.1 683 37.2
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 8.6e-77 292.4 595 39.2
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 8.6e-77 292.4 373 57.4
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.1e-76 292.0 573 42.4
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 1.9e-76 291.2 571 40.3
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 2.5e-76 290.8 413 46.7
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 3.6e-75 287.0 769 40.1
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 6.2e-75 286.2 446 46.4
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 8.0e-75 285.8 422 53.8
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.0e-74 283.5 540 47.0
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.2e-74 283.1 754 36.3
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.2e-73 282.0 664 37.5
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.2e-73 282.0 375 52.0
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 1.3e-72 278.5 452 48.0
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 3.7e-72 276.9 475 43.2
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 8.3e-72 275.8 370 56.8
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.9e-71 274.6 520 45.6
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.6e-70 271.6 398 51.0
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 2.7e-70 270.8 456 50.9
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 6.0e-70 269.6 574 41.6
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 6.0e-70 269.6 580 42.6
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 8.6e-69 265.8 500 46.0
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 2.5e-68 264.2 735 37.6
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 9.5e-68 262.3 755 38.0
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 2.3e-66 257.7 300 53.7
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 5.2e-66 256.5 376 52.7
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 6.8e-66 256.1 563 41.2
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 1.2e-65 255.4 805 36.6
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.3e-64 251.9 368 52.7
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.2e-62 245.4 761 34.8
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 5.6e-60 236.5 359 54.3
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 7.3e-60 236.1 795 36.2
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.8e-59 234.2 356 51.7
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 2.4e-58 231.1 285 54.4
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 7.6e-57 226.1 617 39.5
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.2e-56 224.6 721 31.5
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 1.1e-55 222.2 377 48.0
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 8.4e-48 196.1 217 68.7
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 9.3e-47 192.6 324 50.0
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 9.6e-44 182.6 135 72.6
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 3.1e-42 177.6 176 58.0
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 7.6e-41 172.9 475 37.9
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.1e-38 164.9 125 71.2
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.0e-37 162.5 420 33.6
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 3.4e-33 147.5 114 68.4
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 6.5e-32 143.3 703 29.0
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.2e-31 141.0 422 29.9
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 9.3e-31 139.4 418 33.5
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 3.5e-30 137.5 390 41.0
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.9e-28 131.7 128 59.4
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.5e-28 131.3 420 29.0
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.3e-27 129.0 100 70.0
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 8.2e-27 126.3 466 28.3
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 8.7e-21 106.3 93 62.4
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 1.5e-20 105.5 646 27.6
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 5.3e-18 97.1 174 40.8
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.4e-17 94.4 74 68.9
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 4.5e-17 94.0 393 27.7
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.0e-16 92.8 163 44.2
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.0e-16 90.5 71 67.6
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.1e-15 89.4 71 67.6
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.1e-15 89.4 71 67.6
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-15 89.0 66 69.7
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.5e-15 87.0 63 71.4
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.2e-15 86.7 64 71.9
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-13 82.0 55 76.4
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.3e-13 81.6 55 76.4
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.9e-13 80.9 78 57.7
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 5.1e-13 80.5 53 67.9
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 2.0e-12 78.6 89 55.1
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.0e-12 78.6 55 72.7
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.0e-12 78.6 56 73.2
BcaB01g01655 Brassica carinata HOM05D023890 ORTHO05D023936 4.3e-12 77.4 63 74.6
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-11 75.5 55 69.1
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 6.3e-11 73.6 103 43.7
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 1.1e-10 72.8 60 61.7
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.1e-10 69.7 63 63.5
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 4.5e-09 67.4 51 68.6
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.5e-09 67.4 50 70.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.3e-08 65.9 50 68.0
AL5G30090 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 1.4e-07 62.4 35 97.1
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.2e-06 59.3 39 76.9
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.6e-06 57.8 39 74.4
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.9e-06 56.6 39 74.4


User provided reference genes

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