Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20360 Brassica carinata HOM05D005126 ORTHO05D006169 5.0e-198 694.5 418 100.0
BcaB04g20363 Brassica carinata HOM05D005126 ORTHO05D006169 6.1e-188 661.0 418 94.3
BcaB04g20358 Brassica carinata HOM05D005126 ORTHO05D006169 2.6e-170 602.4 399 92.7
A01p30560 Brassica napus HOM05D005126 ORTHO05D006169 3.4e-162 575.5 427 80.3
BraA01t03188Z Brassica rapa HOM05D005126 ORTHO05D006169 3.4e-162 575.5 427 80.3
C01p38950 Brassica napus HOM05D005126 ORTHO05D006169 4.7e-156 555.1 449 75.5
BolC1t03845H Brassica oleracea HOM05D005126 ORTHO05D006169 8.0e-156 554.3 449 75.5
Sp2g02860 Schrenkiella parvula HOM05D005126 ORTHO05D006169 1.3e-150 537.0 453 72.4
Thhalv10023224m.g Eutrema salsugineum HOM05D005126 ORTHO05D006169 6.8e-147 524.6 453 70.4
AT1G61690 Arabidopsis thaliana HOM05D005126 ORTHO05D006169 3.5e-127 459.1 448 65.4
AL2G14430 Arabidopsis lyrata HOM05D005126 ORTHO05D006169 1.6e-124 450.3 467 64.2
Carub.0002s0337 Capsella rubella HOM05D005126 ORTHO05D006169 1.8e-123 446.8 451 64.3
CARHR050640 Cardamine hirsuta HOM05D005126 ORTHO05D006169 6.7e-118 428.3 448 64.7
Aa31LG2G9130 Aethionema arabicum HOM05D005126 ORTHO05D006169 2.1e-95 353.6 427 56.4
THA.LOC104809525 Tarenaya hassleriana HOM05D005126 ORTHO05D006169 5.9e-82 308.9 434 50.2
Gohir.D06G212500 Gossypium hirsutum HOM05D005126 ORTHO05D006169 3.2e-64 250.0 419 45.6
Gorai.010G253600 Gossypium raimondii HOM05D005126 ORTHO05D006169 4.7e-63 246.1 419 44.9
Cfa000280 Carpinus fangiana HOM05D005126 ORTHO05D006169 3.4e-61 240.0 502 41.0
CSS0033857 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 4.4e-61 239.6 415 45.1
Duzib192G0985 Durio zibethinus HOM05D005126 ORTHO05D006169 2.2e-60 237.3 499 41.1
Ciclev10007263m.g Citrus clementina HOM05D005126 ORTHO05D006169 8.3e-60 235.3 476 40.3
Haze_06662 Corylus avellana HOM05D005126 ORTHO05D006169 8.3e-60 235.3 511 40.1
Dinv17855 Davidia involucrata HOM05D005126 ORTHO05D006169 3.1e-59 233.4 500 40.0
Potri.011G032200 Populus trichocarpa HOM05D005126 ORTHO05D006169 3.1e-59 233.4 525 38.1
Gohir.A10G017400 Gossypium hirsutum HOM05D005126 ORTHO05D006169 4.1e-59 233.0 446 41.5
DCAR_004173 Daucus carota HOM05D005126 ORTHO05D006169 9.1e-59 231.9 418 44.5
Sabra11G0019400 Salix brachista HOM05D005126 ORTHO05D006169 1.6e-58 231.1 525 37.3
Sabra11G0025300 Salix brachista HOM05D005126 ORTHO05D006169 2.0e-58 230.7 526 38.4
Manes.15G164500 Manihot esculenta HOM05D005126 ORTHO05D006169 5.9e-58 229.2 539 36.7
FvH4_3g03041 Fragaria vesca HOM05D005126 ORTHO05D006169 7.7e-58 228.8 418 43.1
FAN21G2838 Fragaria x ananassa HOM05D005126 ORTHO05D006169 1.0e-57 228.4 418 43.1
Lj2C276T6 Lonicera japonica HOM05D005126 ORTHO05D006169 2.9e-57 226.9 413 42.6
PSO832G1831 Papaver somniferum HOM05D005126 ORTHO05D006169 8.6e-57 225.3 460 44.3
Actinidia26962 Actinidia chinensis HOM05D005126 ORTHO05D006169 1.9e-56 224.2 416 44.0
Aqoxy4G01910 Aquilegia oxysepala HOM05D005126 ORTHO05D006169 1.9e-56 224.2 462 44.8
RcHm_v2.0_Chr5g0004701 Rosa chinensis HOM05D005126 ORTHO05D006169 4.2e-56 223.0 418 42.1
CANSAT35G0768 Cannabis sativa HOM05D005126 ORTHO05D006169 9.5e-56 221.9 487 37.4
Glyma.08G061700 Glycine max HOM05D005126 ORTHO05D006169 9.5e-56 221.9 472 40.7
Medtr4g092040 Medicago truncatula HOM05D005126 ORTHO05D006169 2.1e-55 220.7 459 40.5
Glyma.07G187500 Glycine max HOM05D005126 ORTHO05D006169 1.0e-54 218.4 464 39.7
TPR.G13921 Trifolium pratense HOM05D005126 ORTHO05D006169 1.4e-54 218.0 483 37.9
Lj4g0001880 Lotus japonicus HOM05D005126 ORTHO05D006169 1.8e-54 217.6 490 38.0
PSO210G4646 Papaver somniferum HOM05D005126 ORTHO05D006169 2.3e-54 217.2 463 43.8
CiPaw.09G152800 Carya illinoinensis HOM05D005126 ORTHO05D006169 3.0e-54 216.9 510 36.9
Gohir.A06G208600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 3.0e-54 216.9 419 42.0
Potri.004G030500 Populus trichocarpa HOM05D005126 ORTHO05D006169 1.2e-53 214.9 539 39.3
Prupe.4G030200 Prunus persica HOM05D005126 ORTHO05D006169 1.5e-53 214.5 505 37.6
arahy.Tifrunner.gnm1.ann1.7M140W Arachis hypogaea HOM05D005126 ORTHO05D006169 2.0e-53 214.2 448 39.5
arahy.Tifrunner.gnm1.ann1.JX13SW Arachis hypogaea HOM05D005126 ORTHO05D006169 3.4e-53 213.4 448 40.4
Sopen02g024620 Solanum pennellii HOM05D005126 ORTHO05D006169 1.3e-52 211.5 452 40.3
CAN.G424.91 Capsicum annuum HOM05D005126 ORTHO05D006169 2.2e-52 210.7 462 43.1
PGR031G2928 Punica granatum HOM05D005126 ORTHO05D006169 2.2e-52 210.7 450 40.0
Peaxi162Scf00931g00055 Petunia axillaris HOM05D005126 ORTHO05D006169 4.9e-52 209.5 442 39.6
VMungo0251G0970 Vigna mungo HOM05D005126 ORTHO05D006169 4.9e-52 209.5 489 38.7
COL.COLO4_33008 Corchorus olitorius HOM05D005126 ORTHO05D006169 8.3e-52 208.8 422 42.9
TWI63G0986 Tripterygium wilfordii HOM05D005126 ORTHO05D006169 8.3e-52 208.8 508 37.2
Phvul.002G219000 Phaseolus vulgaris HOM05D005126 ORTHO05D006169 1.4e-51 208.0 475 38.7
Nitab4.5_0000503g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 1.8e-51 207.6 454 39.0
PGSC0003DMG400021720 Solanum tuberosum HOM05D005126 ORTHO05D006169 1.8e-51 207.6 458 37.6
TAR624G1039 Trochodendron aralioides HOM05D005126 ORTHO05D006169 3.1e-51 206.8 504 37.3
MELO3C007347.2 Cucumis melo HOM05D005126 ORTHO05D006169 5.4e-51 206.1 481 39.5
AUR62006818 Chenopodium quinoa HOM05D005126 ORTHO05D006169 1.2e-50 204.9 422 40.8
QL05p077365 Quercus lobata HOM05D005126 ORTHO05D006169 1.2e-50 204.9 500 42.4
Psat7g105840 Pisum sativum HOM05D005126 ORTHO05D006169 2.0e-50 204.1 469 37.5
Lalb_Chr09g0327171 Lupinus albus HOM05D005126 ORTHO05D006169 2.7e-50 203.8 480 39.0
Nitab4.5_0006456g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 2.7e-50 203.8 454 37.9
Hund23540 Selenicereus undatus HOM05D005126 ORTHO05D006169 4.5e-50 203.0 427 40.5
Sc05g0008390 Simmondsia chinensis HOM05D005126 ORTHO05D006169 5.9e-50 202.6 424 39.6
Actinidia05547 Actinidia chinensis HOM05D005126 ORTHO05D006169 1.0e-49 201.8 420 40.5
Eucgr.H00119 Eucalyptus grandis HOM05D005126 ORTHO05D006169 1.3e-49 201.4 492 37.6
CsaV3_6G049470 Cucumis sativus L. HOM05D005126 ORTHO05D006169 1.7e-49 201.1 486 39.1
CSS0041207 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 2.3e-49 200.7 416 41.3
SalBow4G2671 Salvia bowleyana HOM05D005126 ORTHO05D006169 5.0e-49 199.5 410 40.0
Sed0023382 Sechium edule HOM05D005126 ORTHO05D006169 6.6e-49 199.1 469 38.0
Ca_18455_v3 Cicer arietinum L. HOM05D005126 ORTHO05D006169 8.6e-49 198.7 480 37.1
Nn1g03751 Nelumbo nucifera HOM05D005126 ORTHO05D006169 8.6e-49 198.7 495 40.2
ClCG01G022310 Citrullus lanatus HOM05D005126 ORTHO05D006169 1.9e-48 197.6 515 38.6
Migut.N00381 Erythranthe guttata HOM05D005126 ORTHO05D006169 2.5e-48 197.2 413 39.7
MBI07_g11719_MAGBIO Magnolia biondii HOM05D005126 ORTHO05D006169 3.3e-48 196.8 500 35.0
ECA236G2220 Erigeron canadensis HOM05D005126 ORTHO05D006169 1.2e-47 194.9 428 40.2
Rhsim13G0163000 Rhododendron simsii HOM05D005126 ORTHO05D006169 1.6e-47 194.5 415 38.6
MSTRG.4220 Avicennia marina HOM05D005126 ORTHO05D006169 2.1e-47 194.1 411 39.9
Oeu015946.3 Olea europaea HOM05D005126 ORTHO05D006169 1.0e-46 191.8 479 35.5
EL10Ac4g09560 Beta vulgaris HOM05D005126 ORTHO05D006169 5.2e-46 189.5 428 38.1
vmacro03741 Vaccinium macrocarpon HOM05D005126 ORTHO05D006169 6.8e-46 189.1 415 39.0
Duzib160G0882 Durio zibethinus HOM05D005126 ORTHO05D006169 5.8e-45 186.0 261 51.7
Ah.06g190720 Amaranthus hybridus HOM05D005126 ORTHO05D006169 2.9e-44 183.7 438 37.0
Zm00001eb245580 Zea mays HOM05D005126 ORTHO05D006169 2.9e-44 183.7 445 37.5
Gohir.D10G017600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 6.4e-44 182.6 437 35.5
Gorai.011G019500 Gossypium raimondii HOM05D005126 ORTHO05D006169 8.3e-44 182.2 437 35.5
MD10G1310700 Malus domestica HOM05D005126 ORTHO05D006169 1.8e-43 181.0 502 35.3
Lsat_1_v5_gn_7_18540 Lactuca sativa HOM05D005126 ORTHO05D006169 3.2e-43 180.3 470 36.8
ATR0804G089 Amborella trichopoda HOM05D005126 ORTHO05D006169 2.7e-42 177.2 499 34.3
CDE01G0539 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 2.7e-42 177.2 418 38.0
AUR62000477 Chenopodium quinoa HOM05D005126 ORTHO05D006169 2.7e-42 177.2 367 40.3
HanXRQChr05g0130831 Helianthus annuus HOM05D005126 ORTHO05D006169 4.6e-42 176.4 475 37.1
Cc02_g11860 Coffea canephora HOM05D005126 ORTHO05D006169 1.1e-40 171.8 409 37.7
Hma1.2p1_0809F.1_g221780 Hydrangea macrophylla HOM05D005126 ORTHO05D006169 1.6e-39 167.9 372 40.1
unitig_736.g22481 Utricularia gibba HOM05D005126 ORTHO05D006169 1.6e-39 167.9 423 38.5
Oeu030881.1 Olea europaea HOM05D005126 ORTHO05D006169 1.1e-38 165.2 269 45.4
GSVIVG01002717001 Vitis vinifera HOM05D005126 ORTHO05D006169 7.0e-35 152.5 314 40.1
SMO141G0003 Selaginella moellendorffii HOM05D005126 ORTHO05D006169 1.1e-32 145.2 443 35.4
FAN25G0472 Fragaria x ananassa HOM05D005126 ORTHO05D006169 4.3e-32 143.3 208 48.6
SGA_v2.0_scaffold216G42402 Striga asiatica HOM05D005126 ORTHO05D006169 4.0e-30 136.7 483 33.7
CDE12G0347 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 5.8e-29 132.9 330 35.2
GSVIVG01006464001 Vitis vinifera HOM05D005126 ORTHO05D006169 5.4e-27 126.3 413 38.7
Pp3c16_8350 Physcomitrium patens HOM05D005126 ORTHO05D006169 9.2e-27 125.6 595 28.2
AagrBONN_evm.TU.Sc2ySwM_368.2701 Anthoceros agrestis HOM05D005126 ORTHO05D006169 7.8e-26 122.5 280 38.6
SEGI_24274 Sequoiadendron giganteum HOM05D005126 ORTHO05D006169 2.8e-23 114.0 296 35.5
TAR626G0260 Trochodendron aralioides HOM05D005126 ORTHO05D006169 1.2e-21 108.6 160 46.2
Mapoly0032s0118 Marchantia polymorpha HOM05D005126 ORTHO05D006169 1.7e-20 104.8 194 43.3
Cpa.g.sc871.1 Carica papaya HOM05D005126 ORTHO05D006169 6.4e-20 102.8 455 30.5
Atru.chr10.2054 Acer truncatum HOM05D005126 ORTHO05D006169 1.9e-19 101.3 133 52.6
MD05G1335200 Malus domestica HOM05D005126 ORTHO05D006169 3.9e-17 93.6 339 29.8
GSVIVG01006404001 Vitis vinifera HOM05D005126 ORTHO05D006169 1.2e-15 88.6 316 33.2
Thecc.06G207200 Theobroma cacao HOM05D005126 ORTHO05D006169 2.1e-15 87.8 225 36.0
Atru.chr10.2052 Acer truncatum HOM05D005126 ORTHO05D006169 1.1e-14 85.5 219 30.1
FvH4_3g03071 Fragaria vesca HOM05D005126 ORTHO05D006169 1.4e-14 85.1 125 48.0
Os03g0669800 Oryza sativa ssp. japonica HOM05D005126 ORTHO05D006169 5.2e-14 83.2 260 35.8
CBR_g52260 Chara braunii HOM05D005126 ORTHO05D006169 5.8e-13 79.7 448 27.0
TAR626G1585 Trochodendron aralioides HOM05D005126 ORTHO05D006169 1.1e-11 75.5 234 33.3
Oeu045309.1 Olea europaea HOM05D005126 ORTHO05D006169 3.5e-10 70.5 224 32.1
MELO3C007345.2 Cucumis melo HOM05D005126 ORTHO05D006169 1.3e-09 68.6 395 27.1
FAN25G1045 Fragaria x ananassa HOM05D005126 ORTHO05D006169 8.7e-09 65.9 56 64.3
CDE12G0914 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 1.1e-08 65.5 352 27.6


User provided reference genes

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