Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 3.0e-81 305.1 150 100.0
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 4.0e-81 304.7 149 100.0
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 4.0e-81 304.7 149 100.0
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 4.0e-81 304.7 149 100.0
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 1.2e-80 303.1 149 99.3
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 4.4e-80 301.2 149 98.7
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.7e-77 292.0 149 94.0
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 7.8e-77 290.4 149 94.0
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 8.6e-76 287.0 149 93.3
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.1e-75 286.6 149 93.3
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 8.9e-73 276.9 149 89.9
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 4.4e-72 274.6 149 89.3
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 7.8e-69 263.8 149 83.2
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 7.8e-69 263.8 149 82.6
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 7.8e-69 263.8 149 83.2
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.7e-68 262.7 149 83.9
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.7e-68 262.7 149 83.2
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 2.3e-68 262.3 149 83.9
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 5.0e-68 261.2 149 83.9
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 8.6e-68 260.4 149 81.2
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.1e-67 260.0 149 82.6
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.1e-67 260.0 149 81.2
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.1e-67 260.0 149 83.2
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.5e-67 258.8 149 83.9
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.5e-67 258.8 149 82.6
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 3.3e-67 258.5 149 81.2
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.3e-67 258.5 149 81.2
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 7.3e-67 257.3 149 79.9
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 9.5e-67 256.9 149 79.9
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 9.5e-67 256.9 149 83.2
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 1.6e-66 256.1 149 80.5
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 1.6e-66 256.1 149 81.2
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.8e-66 255.4 149 79.9
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 6.2e-66 254.2 149 79.9
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 8.1e-66 253.8 151 80.1
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.1e-65 253.4 149 81.2
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.1e-65 253.4 149 81.2
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.1e-65 253.4 149 79.2
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.4e-65 253.1 149 81.9
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.4e-65 253.1 149 79.9
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.4e-65 253.1 149 79.9
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.8e-65 252.7 149 78.5
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.8e-65 252.7 149 78.5
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.8e-65 252.7 149 78.5
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 1.8e-65 252.7 149 79.9
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 4.0e-65 251.5 149 78.5
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 4.0e-65 251.5 149 78.5
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 4.0e-65 251.5 149 79.2
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 4.0e-65 251.5 149 79.9
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 5.2e-65 251.1 149 80.5
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 6.8e-65 250.8 143 81.1
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 6.8e-65 250.8 149 77.9
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 8.9e-65 250.4 149 80.5
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 8.9e-65 250.4 149 78.5
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 8.9e-65 250.4 149 79.2
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 8.9e-65 250.4 149 79.2
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 1.5e-64 249.6 149 80.5
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.5e-64 249.6 149 81.2
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.5e-64 249.6 149 78.5
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.0e-64 249.2 149 78.5
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.0e-64 249.2 149 78.5
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 2.6e-64 248.8 149 79.9
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 2.6e-64 248.8 149 79.9
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 2.6e-64 248.8 149 78.5
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.6e-64 248.8 149 78.5
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.6e-64 248.8 149 78.5
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 2.6e-64 248.8 150 80.7
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 3.4e-64 248.4 149 81.2
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 3.4e-64 248.4 149 79.9
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 4.4e-64 248.1 149 78.5
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 4.4e-64 248.1 149 79.2
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 4.4e-64 248.1 149 80.5
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 7.5e-64 247.3 149 79.2
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 9.9e-64 246.9 149 77.9
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 9.9e-64 246.9 149 77.9
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 1.3e-63 246.5 149 79.2
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.2e-63 245.7 149 79.9
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.9e-63 245.4 149 79.9
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 2.9e-63 245.4 149 77.9
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 2.9e-63 245.4 149 78.5
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.9e-63 245.4 149 77.2
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 4.9e-63 244.6 149 77.2
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.4e-62 243.0 149 77.2
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.4e-62 243.0 149 77.9
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 2.4e-62 242.3 149 77.9
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 2.4e-62 242.3 149 79.2
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 3.2e-62 241.9 149 75.8
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.2e-62 241.9 146 78.1
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 9.2e-62 240.4 149 77.9
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.2e-61 240.0 149 77.2
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.2e-61 240.0 149 76.5
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.2e-61 240.0 149 76.5
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 1.6e-61 239.6 149 77.2
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 2.1e-61 239.2 149 76.5
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 2.1e-61 239.2 149 76.5
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 2.7e-61 238.8 149 75.8
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 3.5e-61 238.4 149 76.5
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 4.6e-61 238.0 149 75.8
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 6.0e-61 237.7 149 75.2
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 7.8e-61 237.3 149 75.8
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 1.3e-60 236.5 149 75.8
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 1.7e-60 236.1 149 75.2
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 2.3e-60 235.7 170 69.4
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.9e-60 235.0 174 67.2
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 3.9e-60 235.0 149 75.8
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 5.1e-60 234.6 149 74.5
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 6.6e-60 234.2 149 74.5
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 8.6e-60 233.8 149 74.5
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 1.9e-59 232.6 149 74.5
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 1.9e-59 232.6 149 74.5
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.9e-59 232.6 149 74.5
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 9.5e-59 230.3 149 74.5
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 6.8e-57 224.2 216 56.5
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.4e-54 216.5 151 66.9
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.0e-52 208.8 149 65.8
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 7.3e-51 204.1 237 49.4
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 7.3e-51 204.1 149 69.8
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 3.1e-49 198.7 150 64.7
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 5.2e-49 198.0 149 61.7
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 7.1e-46 187.6 154 61.0
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 7.3e-43 177.6 80 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.3e-42 176.8 149 59.1
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 7.1e-38 161.0 89 82.0
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 4.6e-37 158.3 83 81.9
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 6.0e-37 157.9 80 87.5
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 3.0e-36 155.6 79 86.1
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 9.9e-32 140.6 149 53.7
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 7.9e-29 131.0 105 65.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 3.3e-27 125.6 114 57.9
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 4.8e-26 121.7 82 65.9
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 8.2e-26 120.9 150 47.3
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 5.5e-22 108.2 58 82.8
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 1.6e-21 106.7 60 80.0
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 3.0e-20 102.4 70 71.4
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 4.8e-18 95.1 69 71.0
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.6e-16 89.4 122 40.2
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 6.5e-15 84.7 72 66.7
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.1e-14 84.0 73 63.0
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 4.6e-13 78.6 116 40.5
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.0e-12 77.4 49 77.6
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 1.0e-12 77.4 54 70.4
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 3.3e-11 72.4 88 42.0
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 4.8e-10 68.6 138 35.5


User provided reference genes

Program Settings