Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 0.0e+00 1153.7 624 100.0
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 2.3e-308 1061.6 626 94.1
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 2.3e-308 1061.6 626 94.1
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 1.2e-301 1039.3 624 92.1
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 1.4e-300 1035.8 624 92.3
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 1.4e-300 1035.8 624 92.3
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 4.0e-300 1034.2 624 92.1
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 2.7e-296 1021.5 633 90.2
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 2.9e-295 1018.1 624 90.9
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 2.9e-295 1018.1 624 90.9
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 7.7e-288 993.4 629 88.9
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 5.2e-284 980.7 619 88.9
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 2.8e-282 974.9 627 88.0
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 1.7e-271 939.1 627 85.6
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 5.0e-271 937.6 562 92.7
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.7e-239 832.8 591 80.9
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 1.0e-231 807.0 621 75.2
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 1.5e-219 766.5 424 94.8
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.0e-210 734.9 675 65.2
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 1.4e-209 733.4 671 64.7
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.5e-209 732.6 670 64.9
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 3.2e-209 732.3 660 66.8
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 4.2e-209 731.9 670 64.9
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 7.2e-209 731.1 676 65.1
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 7.2e-209 731.1 676 65.1
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 2.7e-208 729.2 682 62.2
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 4.6e-208 728.4 697 63.4
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 6.1e-208 728.0 669 64.4
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 3.0e-207 725.7 681 63.9
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 3.9e-207 725.3 684 63.9
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 5.1e-207 724.9 679 64.1
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.5e-206 723.4 641 66.0
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 2.0e-206 723.0 677 64.4
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.5e-206 722.6 645 66.0
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 2.5e-206 722.6 666 64.4
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 5.7e-206 721.5 657 65.1
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 5.7e-206 721.5 640 66.4
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 7.4e-206 721.1 655 65.5
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 1.3e-205 720.3 679 63.8
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 2.2e-205 719.5 702 60.4
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.4e-204 716.8 674 63.9
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.2e-203 713.8 674 63.8
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 4.5e-203 711.8 668 64.5
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.2e-202 709.5 672 64.0
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.1e-201 707.2 523 76.3
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.2e-201 705.7 638 64.6
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 4.2e-201 705.3 669 63.2
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.6e-200 703.4 657 63.0
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 7.9e-200 701.0 670 63.6
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.8e-199 699.9 683 62.7
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 2.3e-199 699.5 668 62.9
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 3.0e-199 699.1 662 64.4
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 3.3e-198 695.7 642 65.4
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.8e-196 689.9 679 62.6
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.3e-196 688.3 646 63.8
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 4.5e-195 685.3 565 70.1
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.3e-194 683.7 733 59.1
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 3.8e-194 682.2 647 64.5
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 6.5e-194 681.4 680 62.4
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 6.5e-194 681.4 568 69.9
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.4e-193 680.2 673 62.6
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 5.5e-193 678.3 686 61.4
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.2e-192 677.2 682 62.0
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.2e-192 677.2 674 62.2
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 8.0e-192 674.5 649 62.4
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 2.3e-191 672.9 609 65.8
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 2.8e-189 666.0 601 65.9
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 1.8e-188 663.3 630 63.2
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 3.1e-188 662.5 679 60.2
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.6e-187 660.2 655 62.9
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.0e-187 659.8 674 60.2
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 2.6e-187 659.4 619 64.3
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.6e-187 659.4 620 64.7
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 2.6e-187 659.4 638 62.7
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.5e-187 659.1 642 61.8
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 8.5e-186 654.4 794 55.3
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 2.1e-184 649.8 562 68.1
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 8.0e-184 647.9 679 58.8
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.4e-183 647.1 669 60.5
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.4e-183 647.1 644 61.3
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.7e-181 640.2 632 61.2
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 3.5e-179 632.5 637 60.6
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 7.7e-179 631.3 679 57.0
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 2.2e-178 629.8 677 57.2
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 2.2e-178 629.8 616 62.8
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 1.1e-177 627.5 678 55.9
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 9.4e-177 624.4 514 70.6
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 5.4e-172 608.6 728 51.9
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 2.8e-168 596.3 512 66.8
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 2.3e-167 593.2 698 56.4
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 1.6e-160 570.5 626 58.0
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 6.1e-160 568.5 663 52.5
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 5.2e-159 565.5 641 52.3
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 8.9e-159 564.7 496 67.5
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 3.5e-155 552.7 464 69.6
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 5.0e-154 548.9 667 54.0
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 2.4e-148 530.0 662 49.8
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.4e-143 514.2 583 52.8
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 8.9e-143 511.5 619 54.6
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 2.6e-142 510.0 616 54.1
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.4e-140 504.2 690 51.0
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 3.2e-140 503.1 677 48.7
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 5.4e-140 502.3 620 54.5
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 6.8e-135 485.3 669 48.1
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.4e-134 483.0 411 69.6
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.1e-127 461.5 445 63.1
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.6e-120 437.6 719 42.4
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 1.7e-117 427.6 566 47.7
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 5.1e-114 416.0 607 45.8
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 7.9e-107 392.1 600 43.8
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 3.7e-104 383.3 503 51.7
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 5.3e-103 379.4 564 44.3
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 9.0e-103 378.6 664 42.2
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 2.5e-100 370.5 308 73.1
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 5.1e-98 362.8 657 42.5
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 6.3e-96 355.9 543 45.1
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 3.2e-92 343.6 279 68.1
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 5.7e-89 332.8 310 71.0
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 1.7e-77 294.7 278 73.0
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.5e-69 265.8 305 54.1
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 8.0e-67 259.2 180 84.4
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.2e-59 235.3 164 79.9
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 2.3e-58 231.1 165 87.3
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.4e-50 205.3 188 76.6
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.4e-47 194.5 294 48.6
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.1e-47 193.7 294 42.2
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 1.2e-41 175.6 103 91.3
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 6.0e-38 163.3 224 59.4
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 5.0e-37 160.2 272 44.9
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.2e-35 155.6 201 50.2
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 6.2e-35 153.3 91 85.7
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 6.2e-35 153.3 91 85.7
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 3.5e-30 137.5 81 77.8
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 9.5e-28 129.4 288 32.3
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 1.1e-26 125.9 81 82.7
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 4.9e-24 117.1 89 75.3
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 9.6e-20 102.8 224 33.5
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 4.0e-18 97.4 326 25.5
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 3.4e-17 94.4 58 74.1
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.7e-16 92.0 167 35.3
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 4.2e-15 87.4 51 86.3
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 5.6e-12 77.0 63 58.7
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 9.0e-10 69.7 219 28.3
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 6.4e-08 63.5 61 60.7
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 6.4e-08 63.5 53 56.6
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 9.3e-07 59.7 36 86.1
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.7e-06 58.2 34 85.3
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 4.6e-06 57.4 32 87.5


User provided reference genes

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