Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20266 Brassica carinata HOM05D013369 ORTHO05D015330 3.7e-137 491.5 241 100.0
A01p29240 Brassica napus HOM05D013369 ORTHO05D015330 4.1e-104 381.7 249 77.1
BraA01t02972Z Brassica rapa HOM05D013369 ORTHO05D015330 4.1e-104 381.7 249 77.1
Carub.0002s0500 Capsella rubella HOM05D013369 ORTHO05D015330 2.1e-55 219.9 225 56.0
C01p37020 Brassica napus HOM05D013369 ORTHO05D015330 3.7e-52 209.1 115 87.0
AL2G16400 Arabidopsis lyrata HOM05D013369 ORTHO05D015330 9.0e-51 204.5 240 50.8
AT1G60250 Arabidopsis thaliana HOM05D013369 ORTHO05D015330 7.1e-48 194.9 241 48.5
BcaC09g49411 Brassica carinata HOM05D013369 ORTHO05D015330 2.1e-47 193.4 93 94.6
BolC1t03657H Brassica oleracea HOM05D013369 ORTHO05D015330 1.0e-46 191.0 146 67.8
AL2G18300 Arabidopsis lyrata HOM05D013369 ORTHO05D015330 4.4e-21 105.9 93 55.9
Carub.0002s0443 Capsella rubella HOM05D013369 ORTHO05D015330 3.1e-19 99.8 233 32.2
CARHR052380 Cardamine hirsuta HOM05D013369 ORTHO05D015330 1.5e-08 64.3 76 46.1
vmacro12230 Vaccinium macrocarpon HOM05D000707 ORTHO05D001462 9.4e-08 61.6 90 36.7
AUR62014102 Chenopodium quinoa HOM05D000707 ORTHO05D008764 1.2e-07 61.2 88 36.4
Phvul.005G113300 Phaseolus vulgaris HOM05D000707 ORTHO05D001462 2.1e-07 60.5 91 30.8
Hma1.2p1_0439F.1_g153160 Hydrangea macrophylla HOM05D000707 ORTHO05D001462 2.7e-07 60.1 89 32.6
Rhsim06G0157800 Rhododendron simsii HOM05D000707 ORTHO05D001462 3.6e-07 59.7 90 35.6
BcaB02g06877 Brassica carinata HOM05D012531 ORTHO05D014427 4.7e-07 59.3 70 32.9
Manes.13G073566 Manihot esculenta HOM05D000707 ORTHO05D001462 4.7e-07 59.3 92 29.3
Sabra17G0026300 Salix brachista HOM05D000707 ORTHO05D001462 4.7e-07 59.3 89 30.3
CAN.G10.10 Capsicum annuum HOM05D000707 ORTHO05D008764 1.4e-06 57.8 91 30.8
RcHm_v2.0_Chr2g0160151 Rosa chinensis HOM05D000707 ORTHO05D001462 1.8e-06 57.4 86 36.0
Cc05_g05160 Coffea canephora HOM05D000707 ORTHO05D001462 2.3e-06 57.0 86 33.7
AUR62002793 Chenopodium quinoa HOM05D000707 ORTHO05D008764 3.0e-06 56.6 88 34.1
Nitab4.5_0003877g0010 Nicotiana tabacum HOM05D000707 ORTHO05D008764 3.0e-06 56.6 91 30.8
Phvul.007G033100 Phaseolus vulgaris HOM05D000707 ORTHO05D008764 3.0e-06 56.6 91 29.7
Atru.chr6.3139 Acer truncatum HOM05D000707 ORTHO05D001462 4.0e-06 56.2 89 30.3
CAN.G921.1 Capsicum annuum HOM05D001117 ORTHO05D000930 4.0e-06 56.2 63 44.4
GSVIVG01030628001 Vitis vinifera HOM05D000707 ORTHO05D001462 4.0e-06 56.2 86 31.4
Rhsim04G0056800 Rhododendron simsii HOM05D000707 ORTHO05D001462 5.2e-06 55.8 91 30.8
Solyc04g007470.3 Solanum lycopersicum HOM05D000707 ORTHO05D008764 5.2e-06 55.8 91 30.8
Sopen04g002550 Solanum pennellii HOM05D000707 ORTHO05D008764 5.2e-06 55.8 91 30.8
Actinidia24274 Actinidia chinensis HOM05D000707 ORTHO05D001462 6.8e-06 55.5 89 31.5
Rhsim04G0056700 Rhododendron simsii HOM05D000707 ORTHO05D001462 6.8e-06 55.5 91 30.8
PGSC0003DMG400005997 Solanum tuberosum HOM05D000707 ORTHO05D008764 6.8e-06 55.5 91 30.8
VMungo0720G0641 Vigna mungo HOM05D000707 ORTHO05D008764 6.8e-06 55.5 91 28.6


User provided reference genes

Program Settings