Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20243 Brassica carinata HOM05D007901 ORTHO05D010902 1.2e-199 699.5 326 100.0
BcaB04g20261 Brassica carinata HOM05D007901 ORTHO05D010902 4.5e-154 548.1 327 82.6
BolC1t03653H Brassica oleracea HOM05D007901 ORTHO05D010902 3.2e-152 542.0 325 80.9
C01p36710 Brassica napus HOM05D007901 ORTHO05D010902 1.0e-150 537.0 325 80.0
BolC1t03631H Brassica oleracea HOM05D007901 ORTHO05D010902 1.0e-150 537.0 325 80.0
BraA01t03004Z Brassica rapa HOM05D007901 ORTHO05D010902 1.1e-149 533.5 325 78.5
A01p29180 Brassica napus HOM05D007901 ORTHO05D010902 7.4e-149 530.8 325 78.8
BcaC09g49444 Brassica carinata HOM05D007901 ORTHO05D010902 5.2e-142 508.1 324 77.5
BraA01t02977Z Brassica rapa HOM05D007901 ORTHO05D010902 4.8e-124 448.4 259 80.3
A01p28980 Brassica napus HOM05D007901 ORTHO05D010902 7.2e-120 434.5 325 68.0
C01p36960 Brassica napus HOM05D007901 ORTHO05D010902 1.4e-118 430.3 278 76.6
BcaC09g49416 Brassica carinata HOM05D007901 ORTHO05D010902 5.9e-114 414.8 256 79.3
C09p47250 Brassica napus HOM05D007901 ORTHO05D010902 1.6e-111 406.8 321 63.6
BolC9t57581H Brassica oleracea HOM05D007901 ORTHO05D010902 4.0e-110 402.1 321 62.9
C09p46950 Brassica napus HOM05D007901 ORTHO05D010902 4.4e-109 398.7 319 63.0
BolC9t57543H Brassica oleracea HOM05D007901 ORTHO05D010902 1.3e-108 397.1 318 62.6
BcaC04g20178 Brassica carinata HOM05D007901 ORTHO05D010902 6.4e-108 394.8 318 62.6
A10p13190 Brassica napus HOM05D007901 ORTHO05D010902 9.5e-104 380.9 320 60.3
BraA10t43416Z Brassica rapa HOM05D007901 ORTHO05D010902 6.2e-103 378.3 320 60.3
A10p13320 Brassica napus HOM05D007901 ORTHO05D010902 1.1e-102 377.5 326 59.2
BraA10t43433Z Brassica rapa HOM05D007901 ORTHO05D010902 8.9e-102 374.4 326 58.9
A10p13180 Brassica napus HOM05D007901 ORTHO05D010902 4.1e-99 365.5 314 62.1
BraA10t43415Z Brassica rapa HOM05D007901 ORTHO05D010902 4.1e-99 365.5 314 62.1
BcaB08g35962 Brassica carinata HOM05D007901 ORTHO05D010902 1.1e-96 357.5 311 59.2
AL2G16360 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 1.8e-94 350.1 315 56.2
AT1G60280 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 2.2e-92 343.2 304 56.9
Sp2g04430 Schrenkiella parvula HOM05D007901 ORTHO05D010902 2.1e-90 336.7 309 55.7
AT1G60300 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 6.0e-90 335.1 305 53.4
Carub.0002s0498 Capsella rubella HOM05D007901 ORTHO05D010902 4.3e-88 328.9 323 50.5
AL2G16320 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 4.0e-86 322.4 316 52.2
AL2G16330 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 4.0e-86 322.4 310 53.5
CARHR052680 Cardamine hirsuta HOM05D007901 ORTHO05D010902 4.0e-86 322.4 314 51.9
AT1G60350 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 5.2e-86 322.0 311 51.8
AT1G60380 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 5.8e-85 318.5 309 51.8
Carub.0170s0002 Capsella rubella HOM05D007901 ORTHO05D010902 4.1e-83 312.4 315 51.4
Carub.0002s0497 Capsella rubella HOM05D007901 ORTHO05D010902 1.3e-81 307.4 315 50.2
AL2G16550 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 2.3e-81 306.6 310 49.4
AT1G60340 Arabidopsis thaliana HOM05D007901 ORTHO05D010902 4.3e-80 302.4 279 54.5
BcaC04g20143 Brassica carinata HOM05D007901 ORTHO05D010902 7.3e-80 301.6 240 62.1
Carub.0170s0003 Capsella rubella HOM05D007901 ORTHO05D010902 4.4e-77 292.4 306 51.0
Carub.0002s0495 Capsella rubella HOM05D007901 ORTHO05D010902 1.0e-73 281.2 311 48.9
AL2G16340 Arabidopsis lyrata HOM05D007901 ORTHO05D010902 1.2e-66 257.7 312 44.6
BraA09t38123Z Brassica rapa HOM05D007901 ORTHO05D016734 2.4e-59 233.4 334 40.4
BcaB04g20260 Brassica carinata HOM05D007901 ORTHO05D016734 1.0e-57 228.0 308 43.2
C04p26040 Brassica napus HOM05D007901 ORTHO05D016734 8.7e-49 198.4 311 40.8
BolC4t24201H Brassica oleracea HOM05D007901 ORTHO05D016734 8.7e-49 198.4 311 40.8
Sp2g04350 Schrenkiella parvula HOM05D007901 ORTHO05D010902 4.8e-47 192.6 195 49.7
BcaC06g31809 Brassica carinata HOM05D007901 ORTHO05D016734 1.0e-41 174.9 255 40.8
BcaC02g10635 Brassica carinata HOM05D007901 ORTHO05D016734 6.3e-39 165.6 257 40.5
Thhalv10024006m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 4.5e-37 159.5 157 55.4
Thhalv10023876m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 5.9e-37 159.1 158 55.1
CARHR052690 Cardamine hirsuta HOM05D007901 ORTHO05D016734 1.4e-35 154.5 163 50.9
C09p31720 Brassica napus HOM05D007901 ORTHO05D024420 3.2e-35 153.3 225 40.4
C09p31750 Brassica napus HOM05D007901 ORTHO05D024420 3.2e-35 153.3 225 40.4
BolC9t56032H Brassica oleracea HOM05D007901 ORTHO05D024420 3.2e-35 153.3 225 40.4
BcaC04g21443 Brassica carinata HOM05D007901 ORTHO05D024420 7.9e-34 148.7 225 39.6
BolC9t56027H Brassica oleracea HOM05D007901 ORTHO05D024420 3.3e-32 143.3 219 39.3
A09p25480 Brassica napus HOM05D007901 ORTHO05D016734 6.3e-31 139.0 162 46.3
Thhalv10024148m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.8e-30 137.5 149 52.3
Thhalv10024149m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 6.5e-28 129.0 147 52.4
BcaC04g21438 Brassica carinata HOM05D007901 ORTHO05D095300 1.4e-27 127.9 204 37.7
Thhalv10024128m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 7.2e-27 125.6 133 54.9
BraA01t03070Z Brassica rapa HOM05D007901 ORTHO05D012782 1.2e-26 124.8 168 39.3
Thhalv10023723m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 3.6e-26 123.2 161 40.4
BolC1t03680H Brassica oleracea HOM05D007901 ORTHO05D012782 8.0e-26 122.1 168 38.7
BcaC04g20179 Brassica carinata HOM05D007901 ORTHO05D012782 2.3e-25 120.6 82 67.1
BcaB01g01779 Brassica carinata HOM05D007901 ORTHO05D016734 3.0e-25 120.2 135 46.7
BcaC09g49391 Brassica carinata HOM05D007901 ORTHO05D012782 3.0e-25 120.2 168 37.5
C01p37150 Brassica napus HOM05D007901 ORTHO05D012782 3.0e-25 120.2 168 37.5
BcaB04g20274 Brassica carinata HOM05D007901 ORTHO05D012782 1.5e-24 117.9 169 39.6
BcaB05g23805 Brassica carinata HOM05D007901 ORTHO05D016734 2.2e-23 114.0 203 37.4
AT1G60240 Arabidopsis thaliana HOM05D007901 ORTHO05D012782 2.8e-23 113.6 161 38.5
Carub.0002s0501 Capsella rubella HOM05D007901 ORTHO05D012782 4.8e-23 112.8 161 39.1
AL2G16410 Arabidopsis lyrata HOM05D007901 ORTHO05D012782 5.3e-22 109.4 161 39.1
CARHR052710 Cardamine hirsuta HOM05D007901 ORTHO05D012782 5.9e-21 105.9 164 38.4
BcaC02g10632 Brassica carinata HOM05D007901 ORTHO05D012782 5.0e-20 102.8 66 63.6
BcaC06g31810 Brassica carinata HOM05D007901 ORTHO05D092289 5.0e-20 102.8 72 72.2
Thhalv10023895m.g Eutrema salsugineum HOM05D007901 ORTHO05D012782 1.6e-18 97.8 119 42.0
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-16 91.7 56 78.6
CARHR052720 Cardamine hirsuta HOM05D007901 ORTHO05D012782 1.2e-16 91.7 163 34.4
Sp2g04410 Schrenkiella parvula HOM05D007901 ORTHO05D010902 1.8e-09 67.8 60 53.3
SGA_v2.0_scaffold207G41949 Striga asiatica HOM05D000010 ORTHO05D003912 4.4e-08 63.2 138 31.2
Atru.chr10.1105 Acer truncatum HOM05D000010 ORTHO05D052312 6.3e-07 59.3 122 28.7
Cc00_g14290 Coffea canephora HOM05D000010 ORTHO05D003912 6.3e-07 59.3 141 31.9
Sed0006043 Sechium edule HOM05D000010 ORTHO05D003912 1.8e-06 57.8 142 31.0
Aa31LG1G10380 Aethionema arabicum HOM05D000010 ORTHO05D011293 3.1e-06 57.0 138 27.5
CSS0034086 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000151 3.1e-06 57.0 124 34.7
CSS0050284 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000151 3.1e-06 57.0 124 34.7
ClCG05G000060 Citrullus lanatus HOM05D000010 ORTHO05D028932 3.1e-06 57.0 136 30.9
Actinidia07125 Actinidia chinensis HOM05D000010 ORTHO05D000151 5.4e-06 56.2 147 31.3
Aa31LG1G10300 Aethionema arabicum HOM05D000010 ORTHO05D011293 5.4e-06 56.2 148 27.0
Thhalv10000520m.g Eutrema salsugineum HOM05D000010 ORTHO05D000302 5.4e-06 56.2 142 33.1
QL11p054925 Quercus lobata HOM05D000010 ORTHO05D003912 5.4e-06 56.2 183 27.3
SalBow5G1948 Salvia bowleyana HOM05D000010 ORTHO05D003912 5.4e-06 56.2 135 29.6
vmacro02313 Vaccinium macrocarpon HOM05D000010 ORTHO05D003912 5.4e-06 56.2 67 41.8
MSTRG.19954 Avicennia marina HOM05D000010 ORTHO05D003912 7.0e-06 55.8 69 44.9
CSS0025009 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 7.0e-06 55.8 67 44.8
CSS0026968 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 7.0e-06 55.8 67 44.8
Migut.B00028 Erythranthe guttata HOM05D000010 ORTHO05D003912 7.0e-06 55.8 67 43.3
Actinidia19690 Actinidia chinensis HOM05D000010 ORTHO05D000151 9.1e-06 55.5 124 34.7
Gohir.A01G001700 Gossypium hirsutum HOM05D000010 ORTHO05D003912 9.1e-06 55.5 173 28.3
Gohir.A12G035000 Gossypium hirsutum HOM05D000010 ORTHO05D003912 9.1e-06 55.5 188 27.7
Gorai.002G001900 Gossypium raimondii HOM05D000010 ORTHO05D003912 9.1e-06 55.5 173 28.9


User provided reference genes

Program Settings