Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 3.6e-152 541.6 279 100.0
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 5.8e-134 481.1 248 100.0
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 9.2e-132 473.8 312 81.1
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 1.6e-131 473.0 303 83.5
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 7.8e-131 470.7 285 86.3
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 1.9e-129 466.1 265 90.6
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 4.3e-129 464.9 297 82.2
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 1.6e-128 463.0 297 81.5
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 2.8e-128 462.2 297 82.8
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 4.0e-127 458.4 258 90.3
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 6.8e-127 457.6 266 91.0
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 9.2e-124 447.2 295 78.6
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 5.2e-119 431.4 299 76.3
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 3.8e-117 425.2 261 85.4
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 6.4e-117 424.5 241 86.7
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 1.9e-116 422.9 261 84.7
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 3.4e-102 375.6 264 70.1
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 9.9e-102 374.0 259 73.4
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 3.8e-101 372.1 264 68.9
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 1.4e-100 370.2 264 68.9
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 3.2e-100 369.0 251 73.3
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 4.2e-100 368.6 264 68.9
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 7.1e-100 367.9 253 73.5
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 7.9e-99 364.4 248 73.4
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 5.1e-98 361.7 254 72.4
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 5.1e-98 361.7 247 73.7
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 1.1e-97 360.5 254 71.3
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 3.3e-97 359.0 253 71.5
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 3.3e-97 359.0 264 69.7
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 7.4e-97 357.8 241 73.9
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 9.6e-97 357.5 251 70.9
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 9.6e-97 357.5 254 70.9
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 2.8e-96 355.9 264 67.4
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 6.2e-96 354.8 244 72.1
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 8.1e-96 354.4 242 74.0
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 1.8e-95 353.2 254 69.3
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 3.1e-95 352.4 254 70.9
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 5.3e-95 351.7 243 72.0
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 2.6e-94 349.4 194 91.2
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 4.5e-94 348.6 271 66.4
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 5.8e-94 348.2 241 71.8
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 5.8e-94 348.2 260 69.2
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 7.6e-94 347.8 242 71.9
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 1.0e-93 347.4 255 69.4
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 1.0e-93 347.4 245 70.2
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 1.0e-93 347.4 250 70.0
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 1.7e-93 346.7 251 71.3
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 1.7e-93 346.7 249 69.9
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 2.2e-93 346.3 254 67.7
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 3.8e-93 345.5 244 70.5
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 6.5e-93 344.7 262 67.2
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 8.4e-93 344.4 242 68.6
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 1.1e-92 344.0 241 71.0
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 1.1e-92 344.0 239 71.5
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 1.4e-92 343.6 271 64.2
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 1.9e-92 343.2 239 71.1
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 1.9e-92 343.2 254 68.5
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 4.2e-92 342.0 263 66.5
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 7.1e-92 341.3 249 68.3
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 7.1e-92 341.3 241 71.0
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 7.1e-92 341.3 242 70.7
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 7.1e-92 341.3 252 69.0
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 1.6e-91 340.1 278 62.9
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 1.8e-90 336.7 269 65.8
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 2.3e-90 336.3 249 68.3
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 2.3e-90 336.3 247 68.4
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 3.0e-90 335.9 237 72.2
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 5.1e-90 335.1 238 71.4
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 1.1e-89 334.0 232 74.1
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 3.3e-89 332.4 249 67.1
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 7.4e-89 331.3 242 68.6
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 2.8e-88 329.3 265 63.0
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 1.1e-87 327.4 253 65.2
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 1.1e-87 327.4 236 69.5
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 2.4e-87 326.2 233 70.4
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 2.4e-87 326.2 259 66.0
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 1.2e-86 323.9 235 67.7
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.5e-86 323.6 246 64.2
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.5e-86 323.6 246 64.2
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 7.6e-86 321.2 257 65.0
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 8.5e-85 317.8 252 63.9
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 5.5e-84 315.1 239 66.1
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 2.1e-83 313.2 239 68.6
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 7.9e-83 311.2 256 61.7
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 3.9e-82 308.9 233 65.7
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 6.3e-80 301.6 226 67.7
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 8.2e-80 301.2 250 63.6
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 6.9e-79 298.1 213 68.5
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 1.7e-77 293.5 257 58.8
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 8.8e-74 281.2 239 61.9
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 3.3e-73 279.3 239 58.6
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 4.4e-73 278.9 209 68.4
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 9.1e-71 271.2 211 66.8
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 2.0e-70 270.0 210 65.7
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 8.5e-69 264.6 188 68.6
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 2.8e-64 249.6 225 54.7
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 1.1e-63 247.7 266 51.9
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 7.0e-63 245.0 237 54.0
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 7.0e-55 218.4 254 50.0
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 4.7e-51 205.7 227 44.5
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 4.2e-44 182.6 228 43.0
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 8.8e-42 174.9 132 68.2
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 1.2e-41 174.5 234 42.3
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 3.3e-36 156.4 242 38.8
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 1.6e-30 137.5 93 71.0
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 5.9e-30 135.6 200 42.5
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 1.9e-28 130.6 218 40.8
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 1.4e-18 97.8 100 52.0
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 1.7e-16 90.9 84 54.8
MBI17_g35869_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 3.0e-13 80.1 54 68.5
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 1.9e-12 77.4 75 60.0
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 1.9e-12 77.4 75 60.0
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 5.6e-12 75.9 75 58.7
VMungo1215G3051 Vigna mungo HOM05D006923 ORTHO05D008697 7.3e-12 75.5 43 76.7
CiPaw.05G144000 Carya illinoinensis HOM05D006923 ORTHO05D008697 7.6e-09 65.5 103 41.7
SEGI_22360 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 4.9e-08 62.8 53 50.9
Hma1.2p1_0289F.1_g114510 Hydrangea macrophylla HOM05D006923 ORTHO05D008697 6.4e-08 62.4 58 50.0
C03p46150 Brassica napus HOM05D024156 ORTHO05D027668 3.2e-07 60.1 57 61.4
SEGI_10943 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 4.1e-07 59.7 60 48.3
BcaC09g49613 Brassica carinata HOM05D024156 ORTHO05D093966 5.4e-07 59.3 58 60.3
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 5.4e-07 59.3 49 61.2
CDE06G0154 Ceratophyllum demersum HOM05D006923 ORTHO05D130285 1.6e-06 57.8 40 75.0


User provided reference genes

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