Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 7.1e-173 610.5 315 100.0
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 6.7e-155 550.8 329 86.6
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 8.7e-155 550.4 329 86.3
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 1.6e-153 546.2 329 87.8
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 4.8e-153 544.7 329 87.8
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 9.4e-149 530.4 334 82.0
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 1.5e-143 513.1 333 78.7
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 2.2e-142 509.2 335 78.8
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 3.0e-139 498.8 332 78.3
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 6.7e-139 497.7 332 77.4
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 4.8e-137 491.5 332 76.5
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 4.4e-122 441.8 431 59.4
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 2.9e-118 429.1 342 66.4
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 1.5e-109 400.2 346 60.1
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 9.5e-109 397.5 348 58.9
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 4.0e-107 392.1 346 59.8
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 5.2e-107 391.7 346 59.2
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 8.9e-107 391.0 346 60.1
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 2.0e-106 389.8 348 59.2
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 2.0e-106 389.8 338 60.1
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 1.1e-104 384.0 344 58.4
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 7.0e-104 381.3 348 57.5
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 9.2e-104 380.9 307 64.2
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 1.2e-103 380.6 346 58.1
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 1.6e-103 380.2 344 58.4
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 1.6e-103 380.2 347 57.6
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 2.0e-103 379.8 345 56.8
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 1.6e-100 370.2 345 57.4
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 1.1e-99 367.5 344 57.8
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 1.4e-99 367.1 346 57.5
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 1.8e-99 366.7 342 56.4
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.1e-99 365.9 329 57.4
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 6.8e-99 364.8 342 55.8
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 2.0e-98 363.2 342 56.4
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 2.6e-98 362.8 338 56.2
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 1.7e-97 360.1 342 55.6
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 4.9e-97 358.6 346 56.1
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 6.4e-97 358.2 345 54.8
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 8.3e-97 357.8 346 52.9
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 7.0e-96 354.8 354 54.0
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 1.2e-95 354.0 346 55.5
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 3.9e-94 349.0 347 54.5
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 3.9e-94 349.0 337 54.6
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 2.5e-93 346.3 281 63.3
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 4.3e-93 345.5 347 54.5
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 1.6e-92 343.6 340 56.8
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 1.6e-92 343.6 329 53.2
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 2.1e-92 343.2 344 53.8
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 6.2e-92 341.7 280 62.9
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 6.2e-92 341.7 347 52.4
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 2.3e-91 339.7 337 53.4
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 8.9e-91 337.8 341 52.8
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 1.5e-90 337.0 343 51.9
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 2.6e-90 336.3 343 50.4
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 4.4e-90 335.5 340 51.2
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 9.9e-90 334.3 345 51.6
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 2.9e-89 332.8 320 54.1
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 2.9e-89 332.8 341 52.2
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 3.7e-89 332.4 340 50.9
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 1.9e-88 330.1 350 51.1
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 9.2e-88 327.8 317 56.5
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 2.7e-87 326.2 326 54.3
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 4.6e-87 325.5 345 49.9
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 5.1e-86 322.0 315 52.7
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 1.9e-85 320.1 326 50.9
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 2.5e-85 319.7 339 51.0
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 4.3e-85 318.9 341 49.3
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 9.5e-85 317.8 344 51.5
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 4.7e-84 315.5 344 48.3
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 8.1e-84 314.7 352 48.6
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 1.4e-83 313.9 379 47.5
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 1.8e-83 313.5 328 51.2
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 2.4e-83 313.2 337 51.0
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 3.1e-83 312.8 345 52.2
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 8.9e-83 311.2 334 50.9
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 3.8e-81 305.8 343 48.7
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 8.4e-81 304.7 348 49.4
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 1.9e-80 303.5 321 51.7
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 5.4e-80 302.0 313 54.0
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 1.2e-79 300.8 277 54.9
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 2.7e-79 299.7 337 53.4
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 4.6e-79 298.9 309 52.1
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 7.8e-79 298.1 340 47.1
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 6.6e-78 295.0 341 46.6
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 8.7e-78 294.7 281 53.7
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 7.3e-77 291.6 339 46.3
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 6.2e-76 288.5 328 48.2
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 4.3e-69 265.8 340 45.0
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 9.9e-66 254.6 217 59.9
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 6.7e-62 241.9 215 57.2
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 2.4e-51 206.8 212 50.5
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 1.2e-47 194.5 287 37.6
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 2.3e-46 190.3 299 41.5
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 1.6e-44 184.1 134 73.9
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 2.8e-44 183.3 198 56.6
AUR62022479 Chenopodium quinoa HOM05D006958 ORTHO05D008814 1.5e-42 177.6 172 54.7
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 1.0e-41 174.9 186 48.9
Oeu049903.1 Olea europaea HOM05D006958 ORTHO05D008814 3.0e-38 163.3 170 49.4
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 6.7e-38 162.2 112 75.0
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 7.2e-32 142.1 295 35.3
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 7.9e-31 138.7 145 47.6
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 4.8e-28 129.4 188 37.8
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 1.5e-26 124.4 242 31.4
Os07g0586000 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 3.4e-26 123.2 171 46.2
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 4.2e-24 116.3 91 61.5
SEGI_02529 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 8.0e-23 112.1 160 37.5
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 2.6e-21 107.1 107 48.6
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 1.8e-19 100.9 105 51.4
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 1.7e-17 94.4 92 48.9
Psat7g107960 Pisum sativum HOM05D006958 ORTHO05D008814 8.0e-07 58.9 95 38.9
Psat0s3396g0160 Pisum sativum HOM05D006958 ORTHO05D008814 5.2e-06 56.2 37 64.9


User provided reference genes

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