Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20213 Brassica carinata HOM05D000240 ORTHO05D002608 4.7e-169 597.8 309 100.0
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 3.3e-162 575.1 306 97.4
BolC1t03589H Brassica oleracea HOM05D000240 ORTHO05D002608 3.3e-162 575.1 306 97.4
Sp2g05010 Schrenkiella parvula HOM05D000240 ORTHO05D002608 1.4e-109 400.2 391 60.1
A09p18080 Brassica napus HOM05D000240 ORTHO05D002608 1.2e-108 397.1 391 58.6
BraA09t37442Z Brassica rapa HOM05D000240 ORTHO05D002608 1.2e-108 397.1 391 58.6
C09p22550 Brassica napus HOM05D000240 ORTHO05D002608 2.1e-108 396.4 391 58.1
BolC9t55171H Brassica oleracea HOM05D000240 ORTHO05D002608 2.1e-108 396.4 391 58.1
Thhalv10023277m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 5.1e-107 391.7 388 60.1
CARHR283830 Cardamine hirsuta HOM05D000240 ORTHO05D002608 1.6e-100 370.2 386 56.7
AT1G59540 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 1.1e-98 364.0 391 55.2
AL2G17530 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 7.6e-95 351.3 408 52.7
Carub.0002s0589 Capsella rubella HOM05D000240 ORTHO05D002608 3.9e-91 339.0 397 52.1
BcaC06g31787 Brassica carinata HOM05D000240 ORTHO05D002608 7.9e-84 314.7 282 61.7
C04p26110 Brassica napus HOM05D000240 ORTHO05D002608 4.1e-80 302.4 296 59.5
BcaC02g10642 Brassica carinata HOM05D000240 ORTHO05D002608 5.5e-77 292.0 290 59.0
BolC4t24193H Brassica oleracea HOM05D000240 ORTHO05D002608 1.6e-76 290.4 316 55.7
Aa31LG2G10580 Aethionema arabicum HOM05D000240 ORTHO05D002608 6.7e-75 285.0 255 59.6
THA.LOC104816760 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 2.8e-73 279.6 392 43.1
BcaC04g22168 Brassica carinata HOM05D000240 ORTHO05D002608 1.9e-69 266.9 346 48.8
Thecc.08G085000 Theobroma cacao HOM05D000240 ORTHO05D002608 1.2e-47 194.5 394 35.0
Ciclev10027806m.g Citrus clementina HOM05D000240 ORTHO05D002608 2.7e-47 193.4 379 34.0
QL12p038572 Quercus lobata HOM05D000240 ORTHO05D002608 1.9e-45 187.2 378 34.1
Atru.chr13.866 Acer truncatum HOM05D000240 ORTHO05D002608 5.6e-45 185.7 400 34.0
Haze_22395 Corylus avellana HOM05D000240 ORTHO05D002608 2.1e-44 183.7 375 34.4
Haze_22403 Corylus avellana HOM05D000240 ORTHO05D002608 2.1e-44 183.7 375 34.4
Cfa013743 Carpinus fangiana HOM05D000240 ORTHO05D002608 5.2e-43 179.1 375 33.6
CiPaw.07G172400 Carya illinoinensis HOM05D000240 ORTHO05D002608 5.2e-43 179.1 384 32.6
GSVIVG01009305001 Vitis vinifera HOM05D000240 ORTHO05D002608 3.4e-42 176.4 380 33.7
Duzib093G1309 Durio zibethinus HOM05D000240 ORTHO05D002608 1.3e-41 174.5 399 33.6
TWI56G0102 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 7.0e-40 168.7 379 31.7
CSS0016409 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 4.6e-39 166.0 380 31.3
Lj4A75G32 Lonicera japonica HOM05D000240 ORTHO05D002608 1.7e-38 164.1 381 34.1
Potri.014G013300 Populus trichocarpa HOM05D000240 ORTHO05D002608 1.5e-37 161.0 380 32.1
Sabra14G0008100 Salix brachista HOM05D000240 ORTHO05D002608 1.9e-37 160.6 390 32.1
Migut.C00475 Erythranthe guttata HOM05D000240 ORTHO05D002608 7.3e-37 158.7 377 29.2
Nn5g30658 Nelumbo nucifera HOM05D000240 ORTHO05D002608 9.5e-37 158.3 380 31.3
ClCG08G016690 Citrullus lanatus HOM05D000240 ORTHO05D002608 2.8e-36 156.8 378 30.4
vmacro04596 Vaccinium macrocarpon HOM05D000240 ORTHO05D002608 1.4e-35 154.5 381 31.5
CANSAT25G0470 Cannabis sativa HOM05D000240 ORTHO05D002608 1.8e-35 154.1 390 31.3
TAR628G0964 Trochodendron aralioides HOM05D000240 ORTHO05D002608 1.8e-35 154.1 414 30.0
Prupe.1G419600 Prunus persica HOM05D000240 ORTHO05D002608 2.3e-35 153.7 369 31.4
PGR031G0176 Punica granatum HOM05D000240 ORTHO05D002608 2.3e-35 153.7 385 32.5
Cpa.g.sc524.3 Carica papaya HOM05D000240 ORTHO05D002608 3.1e-35 153.3 395 31.9
COL.COLO4_28466 Corchorus olitorius HOM05D000240 ORTHO05D002608 3.1e-35 153.3 281 37.0
arahy.Tifrunner.gnm1.ann1.IRA02K Arachis hypogaea HOM05D000240 ORTHO05D002608 2.0e-34 150.6 365 31.5
PSO675G0923 Papaver somniferum HOM05D000240 ORTHO05D002608 2.6e-34 150.2 364 31.3
Peaxi162Scf00340g00071 Petunia axillaris HOM05D000240 ORTHO05D002608 2.6e-34 150.2 374 32.6
PSO541G1283 Papaver somniferum HOM05D000240 ORTHO05D002608 3.4e-34 149.8 361 31.3
Cc10_g07590 Coffea canephora HOM05D000240 ORTHO05D002608 9.8e-34 148.3 375 31.2
Dinv44933 Davidia involucrata HOM05D000240 ORTHO05D002608 9.8e-34 148.3 342 33.0
MD08G1078700 Malus domestica HOM05D000240 ORTHO05D002608 9.8e-34 148.3 378 29.9
arahy.Tifrunner.gnm1.ann1.UY9GAA Arachis hypogaea HOM05D000240 ORTHO05D002608 1.7e-33 147.5 365 32.1
Nitab4.5_0001426g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 2.2e-33 147.1 383 30.8
Nitab4.5_0002796g0020 Nicotiana tabacum HOM05D000240 ORTHO05D002608 3.7e-33 146.4 316 32.0
DCAR_020061 Daucus carota HOM05D000240 ORTHO05D002608 3.2e-32 143.3 374 31.6
MD15G1065700 Malus domestica HOM05D000240 ORTHO05D002608 3.2e-32 143.3 377 30.5
Sabra02G0091400 Salix brachista HOM05D000240 ORTHO05D002608 3.2e-32 143.3 224 37.5
CAN.G1239.11 Capsicum annuum HOM05D000240 ORTHO05D002608 9.2e-32 141.7 376 31.1
Rhsim07G0217600 Rhododendron simsii HOM05D000240 ORTHO05D002608 1.6e-31 141.0 354 30.5
Sed0004256 Sechium edule HOM05D000240 ORTHO05D002608 2.0e-31 140.6 331 33.2
PGSC0003DMG400004917 Solanum tuberosum HOM05D000240 ORTHO05D002608 2.0e-31 140.6 375 30.9
ECA246G0380 Erigeron canadensis HOM05D000240 ORTHO05D002608 4.6e-31 139.4 359 30.6
FAN27G1967 Fragaria x ananassa HOM05D000240 ORTHO05D002608 4.6e-31 139.4 362 30.4
MELO3C010787.2 Cucumis melo HOM05D000240 ORTHO05D002608 2.3e-30 137.1 362 29.0
Ca_06978_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 8.6e-30 135.2 355 29.3
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 8.6e-30 135.2 360 29.7
MSTRG.1017 Avicennia marina HOM05D000240 ORTHO05D002608 1.1e-29 134.8 376 27.9
CsaV3_2G025940 Cucumis sativus L. HOM05D000240 ORTHO05D002608 1.5e-29 134.4 362 29.6
Migut.O00025 Erythranthe guttata HOM05D000240 ORTHO05D002608 1.9e-29 134.0 352 29.0
Sopen04g031170 Solanum pennellii HOM05D000240 ORTHO05D002608 2.5e-29 133.7 375 29.9
FAN15G2617 Fragaria x ananassa HOM05D000240 ORTHO05D002608 3.3e-29 133.3 373 29.8
FAN20G2284 Fragaria x ananassa HOM05D000240 ORTHO05D002608 4.3e-29 132.9 373 29.5
Solyc04g077540.4 Solanum lycopersicum HOM05D000240 ORTHO05D002608 4.3e-29 132.9 375 29.9
Phvul.001G029600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 5.6e-29 132.5 347 30.5
FAN24G0204 Fragaria x ananassa HOM05D000240 ORTHO05D002608 7.3e-29 132.1 379 30.3
Lalb_Chr14g0368061 Lupinus albus HOM05D000240 ORTHO05D002608 2.8e-28 130.2 369 30.1
Sc15g0005400 Simmondsia chinensis HOM05D000240 ORTHO05D002608 2.8e-28 130.2 383 28.7
Lj5g0010376 Lotus japonicus HOM05D000240 ORTHO05D002608 6.2e-28 129.0 354 29.1
RcHm_v2.0_Chr6g0309971 Rosa chinensis HOM05D000240 ORTHO05D002608 8.1e-28 128.6 373 29.2
Gohir.D02G088200 Gossypium hirsutum HOM05D000240 ORTHO05D002608 1.4e-27 127.9 230 36.1
Gorai.005G098800 Gossypium raimondii HOM05D000240 ORTHO05D002608 1.4e-27 127.9 230 37.0
Hma1.2p1_1170F.1_g263440 Hydrangea macrophylla HOM05D000240 ORTHO05D002608 1.4e-27 127.9 220 34.5
Nn6g34521 Nelumbo nucifera HOM05D000240 ORTHO05D002608 1.8e-27 127.5 227 33.9
Glyma.14G089072 Glycine max HOM05D000240 ORTHO05D002608 2.3e-27 127.1 353 29.5
Manes.05G183300 Manihot esculenta HOM05D000240 ORTHO05D002608 2.3e-27 127.1 360 28.6
Aqoxy6G02483 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 3.1e-27 126.7 375 26.4
MBI16_g32084_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 5.2e-27 125.9 228 33.8
VMungo0647G2543 Vigna mungo HOM05D000240 ORTHO05D002608 5.2e-27 125.9 350 30.6
Eucgr.F02228 Eucalyptus grandis HOM05D000240 ORTHO05D002608 8.9e-27 125.2 384 30.2
EL10Ac1g02353 Beta vulgaris HOM05D000240 ORTHO05D002608 2.6e-26 123.6 382 30.1
Medtr1g017540 Medicago truncatula HOM05D000240 ORTHO05D002608 3.4e-26 123.2 350 30.3
FvH4_2g32710 Fragaria vesca HOM05D000240 ORTHO05D002608 6.4e-25 119.0 237 33.3
TPR.G13004 Trifolium pratense HOM05D000240 ORTHO05D002608 1.9e-24 117.5 359 28.4
AUR62035009 Chenopodium quinoa HOM05D000240 ORTHO05D002608 9.2e-24 115.2 294 31.6
AUR62037459 Chenopodium quinoa HOM05D000240 ORTHO05D002608 9.2e-24 115.2 276 32.6
Hund05279 Selenicereus undatus HOM05D000240 ORTHO05D002608 1.6e-23 114.4 386 27.5
HanXRQChr05g0163591 Helianthus annuus HOM05D000240 ORTHO05D002608 2.1e-23 114.0 339 29.5
Gohir.A06G025300 Gossypium hirsutum HOM05D000240 ORTHO05D002608 1.0e-22 111.7 307 31.3
Gorai.010G027000 Gossypium raimondii HOM05D000240 ORTHO05D002608 3.9e-22 109.8 305 30.8
Lsat_1_v5_gn_6_108441 Lactuca sativa HOM05D000240 ORTHO05D002608 1.1e-21 108.2 341 27.3
CAN.G1239.13 Capsicum annuum HOM05D000240 ORTHO05D002608 1.5e-21 107.8 196 36.7
Gohir.D06G022400 Gossypium hirsutum HOM05D000240 ORTHO05D002608 1.9e-21 107.5 304 30.6
Gohir.D06G027000 Gossypium hirsutum HOM05D000240 ORTHO05D002608 3.3e-21 106.7 316 30.7
SGA_v2.0_scaffold14G07077 Striga asiatica HOM05D000240 ORTHO05D002608 4.3e-21 106.3 350 26.6
Glyma.17G233200 Glycine max HOM05D000240 ORTHO05D002608 7.3e-21 105.5 341 27.3
Oeu048570.1 Olea europaea HOM05D000285 ORTHO05D002608 8.9e-19 98.6 226 32.7
Lalb_Chr22g0355771 Lupinus albus HOM05D000240 ORTHO05D002608 4.4e-18 96.3 248 29.8
Gohir.A02G080300 Gossypium hirsutum HOM05D000240 ORTHO05D002608 2.9e-17 93.6 201 34.8
ATR0739G054 Amborella trichopoda HOM05D000240 ORTHO05D002608 3.8e-17 93.2 359 27.0
Lj5g0023255 Lotus japonicus HOM05D000240 ORTHO05D002608 1.9e-16 90.9 312 28.2
Psat6g017440 Pisum sativum HOM05D000240 ORTHO05D002608 1.9e-13 80.9 228 29.4
unitig_26.g9868 Utricularia gibba HOM05D000240 ORTHO05D002608 1.6e-12 77.8 307 25.4
CiPaw.08G052100 Carya illinoinensis HOM05D000240 ORTHO05D002608 5.2e-11 72.8 87 42.5
Actinidia19586 Actinidia chinensis HOM05D000240 ORTHO05D018195 9.3e-08 62.0 180 30.0
Os11g0552600 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D002608 1.0e-06 58.5 74 37.8
Zm00001eb197580 Zea mays HOM05D000240 ORTHO05D002608 2.3e-06 57.4 85 36.5


User provided reference genes

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