Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 2.2e-199 698.7 347 100.0
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 1.9e-190 669.1 392 87.5
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 6.6e-188 660.6 392 86.2
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 5.2e-185 651.0 387 86.3
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 8.9e-185 650.2 383 87.2
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 1.2e-184 649.8 394 85.0
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 3.4e-184 648.3 394 84.8
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 6.9e-177 624.0 392 81.6
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 1.5e-176 622.9 392 82.1
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 2.0e-176 622.5 392 82.1
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 5.6e-171 604.4 383 83.0
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 1.6e-157 559.7 392 74.2
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 9.6e-155 550.4 381 75.1
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 1.4e-145 520.0 393 68.4
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 1.0e-127 460.7 393 59.3
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 2.3e-124 449.5 350 63.7
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 1.7e-122 443.4 384 60.7
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 6.3e-122 441.4 379 60.7
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 5.3e-121 438.3 398 59.3
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.6e-120 436.8 394 59.1
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.6e-120 436.8 394 59.1
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 2.6e-120 436.0 410 58.3
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 5.9e-120 434.9 394 58.4
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 1.0e-119 434.1 410 58.3
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 3.8e-119 432.2 394 58.6
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 5.0e-119 431.8 412 55.8
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 5.0e-119 431.8 393 56.5
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 8.5e-119 431.0 391 59.3
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 8.5e-119 431.0 395 58.2
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 1.1e-118 430.6 395 57.7
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 1.9e-118 429.9 393 57.0
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 1.9e-118 429.9 374 60.7
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 5.5e-118 428.3 394 58.1
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.5e-118 428.3 395 58.5
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 1.6e-117 426.8 394 58.1
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 2.7e-117 426.0 394 57.9
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 2.7e-117 426.0 391 58.8
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 3.6e-117 425.6 386 56.7
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 4.7e-117 425.2 394 57.1
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 6.1e-117 424.9 394 57.6
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 2.3e-116 422.9 394 56.9
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 2.3e-116 422.9 367 60.2
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 4.0e-116 422.2 394 59.1
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 5.2e-116 421.8 397 55.9
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 5.2e-116 421.8 396 56.6
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 6.8e-116 421.4 394 58.1
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 8.8e-116 421.0 394 57.9
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 1.5e-115 420.2 394 57.4
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.6e-115 419.5 397 56.7
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 2.6e-115 419.5 396 56.1
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 2.6e-115 419.5 394 57.6
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 3.4e-115 419.1 393 55.2
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 3.4e-115 419.1 399 55.9
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 4.4e-115 418.7 422 54.5
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 9.7e-115 417.5 396 56.3
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 1.7e-114 416.8 383 58.7
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 1.7e-114 416.8 387 57.9
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 3.7e-114 415.6 393 55.7
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 6.3e-114 414.8 393 54.7
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 6.3e-114 414.8 397 55.9
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 2.4e-113 412.9 395 55.7
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 2.0e-112 409.8 396 56.8
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 5.9e-112 408.3 411 54.3
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 2.2e-111 406.4 392 56.1
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 5.0e-111 405.2 400 56.0
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 5.0e-111 405.2 392 55.9
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 8.5e-111 404.4 395 54.7
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 1.1e-110 404.1 392 56.1
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 2.5e-110 402.9 389 55.0
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 7.2e-110 401.4 394 55.3
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 7.2e-110 401.4 390 54.6
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.0e-108 397.5 408 54.7
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 2.3e-108 396.4 392 55.4
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 4.0e-108 395.6 395 54.7
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 8.8e-108 394.4 441 50.3
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 1.2e-107 394.0 384 54.4
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 9.8e-107 391.0 395 53.7
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.3e-106 390.6 395 54.4
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 3.7e-106 389.0 393 52.2
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 8.3e-106 387.9 422 50.7
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 1.8e-105 386.7 394 51.5
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 3.1e-105 386.0 398 53.0
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 2.9e-103 379.4 393 52.4
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 5.0e-103 378.6 404 51.2
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 6.6e-103 378.3 398 52.8
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 1.9e-102 376.7 385 51.9
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 1.9e-102 376.7 391 54.7
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.5e-102 374.4 355 57.5
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.4e-100 370.5 427 49.4
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.5e-99 367.1 392 52.6
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.7e-99 365.2 394 52.5
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 1.1e-97 360.9 390 51.3
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 4.5e-96 355.5 387 50.9
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 2.9e-95 352.8 390 50.8
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 7.3e-94 348.2 383 49.9
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 2.1e-93 346.7 366 54.1
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 3.9e-87 325.9 389 47.0
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.1e-86 324.3 388 47.9
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.9e-86 323.6 388 47.9
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 1.2e-85 320.9 429 45.7
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 4.7e-85 318.9 334 53.6
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 4.0e-84 315.8 306 56.2
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 4.4e-83 312.4 352 51.7
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 1.1e-81 307.8 394 44.4
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 4.1e-81 305.8 358 50.6
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 9.5e-78 294.7 383 44.6
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.8e-77 293.1 383 47.5
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 1.8e-76 290.4 393 43.8
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 1.4e-73 280.8 271 54.2
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 4.4e-67 259.2 390 40.5
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 4.9e-66 255.8 296 48.3
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 1.9e-65 253.8 376 41.2
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 4.3e-62 242.7 307 47.6
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 2.0e-59 233.8 388 39.4
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 1.5e-54 217.6 417 35.7
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 9.6e-54 214.9 216 50.5
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 3.6e-53 213.0 258 45.7
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 2.0e-51 207.2 154 68.8
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 2.1e-48 197.2 155 61.9
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 7.6e-43 178.7 284 42.3
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 5.5e-41 172.6 298 40.9
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 2.9e-34 150.2 202 42.6
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.9e-33 147.5 112 66.1
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 5.5e-33 146.0 112 65.2
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.2e-32 144.8 112 65.2
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.7e-31 139.0 112 63.4
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 5.7e-30 136.0 116 64.7
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 3.4e-27 126.7 85 74.1
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 5.0e-26 122.9 96 70.8
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 2.1e-24 117.5 125 47.2
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 4.6e-24 116.3 93 58.1
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 7.7e-19 99.0 106 51.9
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 1.1e-17 95.1 79 59.5
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 5.5e-17 92.8 64 73.4
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 9.7e-14 82.0 60 66.7
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.7e-13 81.3 94 44.7
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 9.1e-12 75.5 81 53.1
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.2e-08 65.1 49 63.3
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 6.1e-08 62.8 65 50.8
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 5.2e-07 59.7 69 43.5


User provided reference genes

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